View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_52 (Length: 287)
Name: NF18003_high_52
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 35918542 - 35918286
Alignment:
| Q |
17 |
tggttgggaggggagatcccacgatgggtggccagccagattcctcgctagagagtactcagcaaagttggttgatatttcgcatcaataacattgttaa |
116 |
Q |
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| T |
35918542 |
tggttgggaggggagatcccacgatgggtggccagccagattcctcgctagagagtactcagcaaagttggttgatatttcgcatcaataacattgttaa |
35918443 |
T |
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| Q |
117 |
cnnnnnnnnnnntactaaatttcaaatttaagggttttgtgacaaactcattttttagtagtcacttttccctaaaaagtgaacatgtttcaaacgtgtg |
216 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35918442 |
caaaaaaaaaaatactaaatttcaaatttaagggttttgtgacaaactcattttttagtagtcacttttccctaaaaagtgaacatgtttcaaacctgtg |
35918343 |
T |
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| Q |
217 |
tcaaattcaatgtgtcatttacattgtctagagtttataaattttagtggaactcat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35918342 |
tcaaattcaatgtgtcatttacattgtctagagtttataaattttagtggaactcat |
35918286 |
T |
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