View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_55 (Length: 280)

Name: NF18003_high_55
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_55
NF18003_high_55
[»] chr4 (3 HSPs)
chr4 (1-280)||(24721943-24722223)
chr4 (69-270)||(24730390-24730591)
chr4 (72-196)||(24691232-24691356)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 24721943 - 24722223
Alignment:
Q  1 tcgctatttatttctgtagtatcatttattcaattttttaattgcaaaatttagtggtataactaaatatttgttattgtgtgttaggatattgggcaat 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24721943 tcgctatttatttctgtagtatcatttatttaattttttaattgcaaaatttagtggtataactaaatatttgttattgtgtgttaggatattgggcaat 24722042  T
Q  101 actttatggacattgtaaactcttctcacgcctatgcaacaggaggaacatcagtcggcgagttctggtactaagatgtcagcattttaactttca-ann 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  24722043 actttatggacattgtaaactcttctcacgcctatgcaacaggaggaacatcagtcggcgagttctggtactaagatgtcagcattttaactttcatttt 24722142  T
Q  200 nnnnnncttcatatgcattgaaaattatccatcgaatttgttttcgtaaaaggtcatcaagtagaaagtttctgtacctct 280  Q
          |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||    
T  24722143 ttttttcttcatatgcattgaaaattatccatcgaatttgttttcgtataaggacattaagtagaaagtttctgtacctct 24722223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 270
Target Start/End: Original strand, 24730390 - 24730591
Alignment:
Q  69 atttgttattgtgtgttaggatattgggcaatactttatggacattgtaaactcttctcacgcctatgcaacaggaggaacatcagtcggcgagttctgg 168  Q
    ||||||||||||||| ||||||||||||  || ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||    
T  24730390 atttgttattgtgtgctaggatattggggcattctttatggacattgtaaactcatctcacacctatgcaacaggaggaacatcagtccgtgagttctgg 24730489  T
Q  169 tactaagatgtcagcattttaactttcaannnnnnnncttcatatgcattgaaaattatccatcgaatttgttttcgtaaaaggtcatcaagtagaaagt 268  Q
    |||||||||| ||||||||||| |||           |||||||||||||||||||||||||| |||| | ||||  | | |||  ||||||||||||||    
T  24730490 tactaagatgccagcattttaagttttttttttcttccttcatatgcattgaaaattatccatggaatgtatttttcttataggaaatcaagtagaaagt 24730589  T
Q  269 tt 270  Q
    ||    
T  24730590 tt 24730591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 24691232 - 24691356
Alignment:
Q  72 tgttattgtgtgttaggatattgggcaatactttatggacattgtaaactcttctcacgcctatgcaacaggaggaacatcagtcggcgagttctggtac 171  Q
    |||| ||||||||||||| || |||  || ||||||||| ||||||||||||||||||  |||||| || ||||| ||||||||| | |||||||||||     
T  24691232 tgtttttgtgtgttaggaaatcgggtcattctttatggatattgtaaactcttctcacagctatgcgactggagggacatcagtccgtgagttctggtat 24691331  T
Q  172 taagatgtcagcattttaactttca 196  Q
     |||||| ||||||||||| |||||    
T  24691332 gaagatgccagcattttaattttca 24691356  T

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