View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_56 (Length: 278)
Name: NF18003_high_56
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 7774373 - 7774121
Alignment:
| Q |
19 |
attgaaatcatccttctctgtgaaatcataaatttccgaactgcgtttgtttccatcagaagcaacattcttagcatacgaacttctacaacgctttgca |
118 |
Q |
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| T |
7774373 |
attgaaatcatccttctctgtgaaatcataaatttccgaactgcgtttgtttccatcagaagcaacattcttagcatacgaacttctacaacgctttgca |
7774274 |
T |
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| Q |
119 |
atataggctaagctggtagaattccaatgctgcactcggattttctgattaggagttttccgattagatggccggacaggaaattgttcacggcgaggaa |
218 |
Q |
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| T |
7774273 |
atataggctaagctggtagaattccaatgctgcactcggattttctgattaggagttttccgattagatggccggacaggaaattgttcacggcgaggaa |
7774174 |
T |
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| Q |
219 |
atatatcaagaaacttgcggctttgtggacaagaataatcaaacttcttctca |
271 |
Q |
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| T |
7774173 |
atatatcaagaaacttgcggctttgtggacaagaataatcaaacttcttctca |
7774121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 7768196 - 7767944
Alignment:
| Q |
19 |
attgaaatcatccttctctgtgaaatcataaatttccgaactgcgtttgtttccatcagaagcaacattcttagcatacgaacttctacaacgctttgca |
118 |
Q |
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|||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| ||||| ||||||||||||| |||| ||||||| || | |||||||| |
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| T |
7768196 |
attgaaatcatcattctctgtgaaatcataaacttccaaactgcgttcgtttctatcaggagcaacattcttaacatatgaacttccactaagctttgca |
7768097 |
T |
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| Q |
119 |
atataggctaagctggtagaattccaatgctgcactcggattttctgattaggagttttccgattagatggccggacaggaaattgttcacggcgaggaa |
218 |
Q |
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| T |
7768096 |
atagaagccaaattggtagaattccaatgctgcacgcggactttctgattaagagttttctgatttgatgacccaaaaggaagttgttcgcgatgaggaa |
7767997 |
T |
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| Q |
219 |
atatatcaagaaacttgcggctttgtggacaagaataatcaaacttcttctca |
271 |
Q |
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| T |
7767996 |
aagtatcaataaacttgcggctttgtggacaagaatactcaaacttcctctca |
7767944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 7779178 - 7778941
Alignment:
| Q |
19 |
attgaaatcatccttctctgtgaaatcataaatttccgaactgcgtttgtttccatcagaagcaacattcttagcatacgaacttctacaacgctttgca |
118 |
Q |
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||||||||| || ||||||||||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||| || | |||||| | |
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| T |
7779178 |
attgaaatcgtcgttctctgtgaaatcataaacttctaaactgcgtttgttgctatcagaagcaacattcttagcatatgaacttccaccaagctttgaa |
7779079 |
T |
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| Q |
119 |
atataggctaagctggtagaattccaatgctgcactcggattttctgattaggagttttccgattagatggccggacaggaaattgttcacggcgaggaa |
218 |
Q |
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| T |
7779078 |
atataagccaagctggtagactcccaatgccgcactcggattttct---------------gatttgatgacccgaaaggaaattgttcacgacgaggaa |
7778994 |
T |
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| Q |
219 |
atatatcaagaaacttgcggctttgtggacaagaataatcaaacttcttctca |
271 |
Q |
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| T |
7778993 |
aagtatcaggaaacttgcggctttgtggagaagaatactcaaacttcttctca |
7778941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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