View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_57 (Length: 278)
Name: NF18003_high_57
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_57 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 69 - 278
Target Start/End: Complemental strand, 59627 - 59418
Alignment:
| Q |
69 |
gcaggtatcgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctg |
168 |
Q |
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| T |
59627 |
gcaggtattgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctg |
59528 |
T |
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| Q |
169 |
gtcgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaa |
268 |
Q |
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| T |
59527 |
gtcgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaa |
59428 |
T |
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| Q |
269 |
gctggcttac |
278 |
Q |
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|||||||||| |
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| T |
59427 |
gctggcttac |
59418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 8689566 - 8689747
Alignment:
| Q |
69 |
gcaggtatcgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctg |
168 |
Q |
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| T |
8689566 |
gcaggtattgtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctg |
8689665 |
T |
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| Q |
169 |
gtcgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgt |
250 |
Q |
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| T |
8689666 |
gtcgtgaccttaccgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgt |
8689747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 37050795 - 37050612
Alignment:
| Q |
82 |
tggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgac |
181 |
Q |
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| T |
37050795 |
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac |
37050696 |
T |
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| Q |
182 |
tgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaagga |
265 |
Q |
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| T |
37050695 |
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaagga |
37050612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 41388145 - 41388353
Alignment:
| Q |
69 |
gcaggtatcgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctg |
168 |
Q |
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| T |
41388145 |
gcaggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcag |
41388244 |
T |
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| Q |
169 |
gtcgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaa |
268 |
Q |
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| T |
41388245 |
ggcgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaa |
41388344 |
T |
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| Q |
269 |
gctggctta |
277 |
Q |
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|||| |||| |
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| T |
41388345 |
gctgtctta |
41388353 |
T |
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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 43647492 - 43647377
Alignment:
| Q |
71 |
aggtatcgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggt |
170 |
Q |
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|||||| ||||||||||||||||| ||||| || ||||| || || ||||| ||||||||||| |||||||| |||||||||||| | ||| | |||||| |
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| T |
43647492 |
aggtattgtgttggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctggt |
43647393 |
T |
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| Q |
171 |
cgtgacctgactgatt |
186 |
Q |
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| T |
43647392 |
cgtgatctaactgatt |
43647377 |
T |
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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 68196 - 68380
Alignment:
| Q |
84 |
gattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgactg |
183 |
Q |
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|||||||| |||||||||||||||||||| |||||||| || || |||||||| |||||||| ||||| ||| | ||| | || |||||||| || || | |
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| T |
68196 |
gattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggtcgtgatctcacag |
68295 |
T |
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| Q |
184 |
attacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaa |
268 |
Q |
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| | | |||||||| | || || ||||| || ||||| ||||| |||| ||||||||||| ||||| || |||||||||| |
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| T |
68296 |
acgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaa |
68380 |
T |
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