View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_60 (Length: 261)
Name: NF18003_high_60
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 24722575 - 24722323
Alignment:
| Q |
1 |
ctcataataatctgcgtaagtgactactttggtccatctgaacaggtgtcgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataa |
100 |
Q |
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| T |
24722575 |
ctcataataatctgcgtaagtgacttctttggtccatctgaacaggtgccgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataa |
24722476 |
T |
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| Q |
101 |
actaagaatcattcctgaatatccaatagtaaatcaaaaacacaatacgcatttttaacttccttagcattacatgatgaattaaaagaataatgagtga |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24722475 |
actaagaatcattcctgaatatcaaatagtaaatcaaaaacacaatacgcatttttaacttccgtagcattacatgatgaattaaaagaataatgagtga |
24722376 |
T |
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| Q |
201 |
ttgcttgtaccttcaacatattgtaagttgagcaagattcttcggtctctgct |
253 |
Q |
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| T |
24722375 |
ttgcttgtaccttcaacatattgtaagttgagcaagattcttcggtctctgct |
24722323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 24691812 - 24691701
Alignment:
| Q |
1 |
ctcataataatctgcgtaagtgactactttggtccatctgaacaggtgtcgcgaaacctgaaatcattatctttcaacataaatacttcaacagaaataa |
100 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
24691812 |
ctcataataatctgcataagtgacttctttggtccatctgaacaggtgccgtgaaacctgaaatcattatctggcaacataaatacttttacagaaataa |
24691713 |
T |
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| Q |
101 |
actaagaatcat |
112 |
Q |
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|||||||||||| |
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| T |
24691712 |
actaagaatcat |
24691701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 24731052 - 24730931
Alignment:
| Q |
2 |
tcataataatctgcgtaagtgactactttggtccatctgaacaggtgtcgcgaaacctg-aaatcattatctttcaacataaatacttcaacagaaataa |
100 |
Q |
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||||||||||||||||| | |||| |||| |||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||| |||||||| ||||| |
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| T |
24731052 |
tcataataatctgcgtacgagacttctttcgtccatctaaacaggtgccgcgaaacctgaaaatcattttcttgcaacataaatatttcaacag-aataa |
24730954 |
T |
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| Q |
101 |
actaagaatcattcctgaatatc |
123 |
Q |
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| T |
24730953 |
actaagaatcatctctgaatatc |
24730931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 24691633 - 24691535
Alignment:
| Q |
145 |
atacgcatttttaacttccttagcattacatgatgaattaaaagaataatgagtgattgcttgtaccttcaacatattgtaagttgagcaagattcttc |
243 |
Q |
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|||||||||| |||||||| | | || |||||||||| ||| |||||| ||||||||| |||||||||||||||||| ||||||| ||| |||||||| |
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| T |
24691633 |
atacgcatttctaacttcccttggatgacatgatgaactaatcgaataaagagtgattggttgtaccttcaacatattataagttgtgcatgattcttc |
24691535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 24730785 - 24730711
Alignment:
| Q |
169 |
attacatgatgaattaaaagaataatgagtgattgcttgtaccttcaacatattgtaagttgagcaagattcttc |
243 |
Q |
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||||||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
24730785 |
attacatgaagaactaaaagaatgacgagtgattgattgtaccttcaacatattgtaagttgtgcatgattcttc |
24730711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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