View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_67 (Length: 247)
Name: NF18003_high_67
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 13949383 - 13949605
Alignment:
| Q |
9 |
gaagaatattatggttttaaattgtggttgtggtcgtgactttgatatgatgacacgatacaaatgatacaattgcaattatcgtcacgatgttgctaag |
108 |
Q |
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| T |
13949383 |
gaagaaaattatggttttaaattgtggttgtggtcgtgactttgatatggtgacacgatacaaatgatgcaattgcaattatcgtcacgatgttgctaag |
13949482 |
T |
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| Q |
109 |
acatctaaaactttataatgttgctataattgtttgcaaaccctaatttaaaaatttgagttgatttcaatttccaagctctcacatctattttttattt |
208 |
Q |
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| T |
13949483 |
acatctaaaactttataatgttgctataattgtttgcaaaccctaatttaaaaatctgagttgatttcaatttccaagctctcacatctattttttattt |
13949582 |
T |
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| Q |
209 |
tgattctctgcctttttcttcat |
231 |
Q |
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||||||| ||||||||||||||| |
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| T |
13949583 |
tgattctttgcctttttcttcat |
13949605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 4038558 - 4038337
Alignment:
| Q |
10 |
aagaatattatggttttaaattgtggttgtggtcgtgactttgatatgatgacacgatacaaatgatacaattgcaattatcgtcacgatgttgctaaga |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
4038558 |
aagaaaattatggttttaaattgtggttgtggtcgtgactttgatatggtgacacgatacaaatgatgcaattgcaattatggtcacgatgttgctaaga |
4038459 |
T |
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| Q |
110 |
catctaaaactttataatgttgctataattgtttgcaaaccctaatttaaaaatttgagttgatttcaatttccaagctctcacatctattttttatttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4038458 |
catctaaaactttataatgttgctataattgtttgcaaaccctaatttaaaaatctgagttgatttcaatttccaagctctcacacctattttttatttt |
4038359 |
T |
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| Q |
210 |
gattctctgcctttttcttcat |
231 |
Q |
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|||||| ||||||||||||||| |
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| T |
4038358 |
gattctatgcctttttcttcat |
4038337 |
T |
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