View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_high_71 (Length: 224)
Name: NF18003_high_71
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_71 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 18791931 - 18792090
Alignment:
| Q |
50 |
aaaatggatgccaagccactgagcaagaaagaaatcaataaaattgtgcaaagtttaactcgccatagcgaatcaagggcgaggtcaaggcgagcggttc |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
18791931 |
aaaatggatgccaagacactgagcaagaaagaaatcaataaaattgtgcaaaggttaacacgccatagcgaatcaagggcgaggtcaaggtgagcagttc |
18792030 |
T |
|
| Q |
150 |
cagaaaattcacactctcacaagttcaagccttgccacaacttttacttagctacttagt |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18792031 |
cagaaagttcacactctcacaagttcaagccttgccacaacttttactcagctacttagt |
18792090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 4973017 - 4972926
Alignment:
| Q |
54 |
tggatgccaagccactgagcaagaaagaaatc-aataaaattgtgcaaagtttaactcgccatagcgaatcaagggcgaggtcaaggcgagc |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || ||||||||| |||| ||| || |||| || || ||||||||||| |||||||||| |
|
|
| T |
4973017 |
tggatgccaagacactgagcaagaaagaaaacaaagaaaattgtgtaaaggttagcttgccacagtgagccaagggcgaggacaaggcgagc |
4972926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 27817899 - 27817977
Alignment:
| Q |
54 |
tggatgccaagccactgagcaagaaagaaatcaataaaattgtgcaaagtttaactcgccatagcgaatcaagggcgag |
132 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||| ||| |||| ||||| ||| ||||||| | ||| |||||||||| |
|
|
| T |
27817899 |
tggatgccaagacaccgagcaagaaagaaaacaacaaatttgtacaaaggttagctcgccacaacgagccaagggcgag |
27817977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 27817479 - 27817539
Alignment:
| Q |
54 |
tggatgccaagccactgagcaagaaagaaatcaataaaattgtgcaaagtttaactcgcca |
114 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||| ||| |||| ||||| ||| ||||||| |
|
|
| T |
27817479 |
tggatgccaagacaccgagcaagaaagaaaacaacaaatttgtacaaaggttagctcgcca |
27817539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University