View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_75 (Length: 201)
Name: NF18003_high_75
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_75 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 31009429 - 31009521
Alignment:
| Q |
92 |
atagtagccgtaccatacccaggtcgaggccacatcaatccaatgatgaacctatgcaaactcctcatctccaacaaccccaacatcgttgtt |
184 |
Q |
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| T |
31009429 |
atagtagccgtaccatacccaggtcgaggccacatcaacccaatgatgaacctatgcaaactcctcatctccaacaaccccaacatcgttgtt |
31009521 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 31004431 - 31004498
Alignment:
| Q |
117 |
gaggccacatcaatccaatgatgaacctatgcaaactcctcatctccaacaaccccaacatcgttgtt |
184 |
Q |
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| T |
31004431 |
gaggccacatcaacccaatgatgaacctatgcaagctccttatctccaagaacaacaacatccttgtt |
31004498 |
T |
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