View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_9 (Length: 514)

Name: NF18003_high_9
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_9
NF18003_high_9
[»] chr5 (5 HSPs)
chr5 (14-496)||(13484203-13484685)
chr5 (351-405)||(17145352-17145406)
chr5 (334-406)||(9123832-9123904)
chr5 (334-406)||(18391602-18391674)
chr5 (359-406)||(2001982-2002029)
[»] chr4 (12 HSPs)
chr4 (361-406)||(7922264-7922309)
chr4 (334-406)||(19854567-19854639)
chr4 (334-406)||(19908694-19908766)
chr4 (359-403)||(33900736-33900780)
chr4 (337-403)||(24488427-24488493)
chr4 (337-395)||(47806246-47806304)
chr4 (334-403)||(10082407-10082476)
chr4 (353-406)||(11286787-11286840)
chr4 (338-382)||(9990292-9990336)
chr4 (366-406)||(10519137-10519177)
chr4 (334-398)||(12671735-12671799)
chr4 (334-386)||(16432944-16432996)
[»] chr3 (9 HSPs)
chr3 (334-403)||(38869505-38869574)
chr3 (361-404)||(13992675-13992718)
chr3 (359-406)||(17588364-17588411)
chr3 (364-406)||(47377366-47377408)
chr3 (361-406)||(8113576-8113621)
chr3 (360-405)||(31138420-31138465)
chr3 (353-406)||(43334518-43334571)
chr3 (334-406)||(5702166-5702236)
chr3 (334-406)||(26768403-26768475)
[»] chr2 (13 HSPs)
chr2 (334-406)||(18324881-18324953)
chr2 (334-406)||(24393247-24393319)
chr2 (359-406)||(27934869-27934916)
chr2 (364-406)||(7413206-7413248)
chr2 (360-406)||(9459070-9459116)
chr2 (364-406)||(37320534-37320576)
chr2 (365-406)||(40896527-40896568)
chr2 (369-406)||(44926423-44926460)
chr2 (357-406)||(45032695-45032744)
chr2 (334-382)||(3503000-3503048)
chr2 (334-398)||(12124555-12124619)
chr2 (344-384)||(19549460-19549500)
chr2 (334-406)||(34903519-34903591)
[»] chr7 (11 HSPs)
chr7 (360-406)||(34885876-34885922)
chr7 (334-406)||(5458058-5458130)
chr7 (358-406)||(8683072-8683120)
chr7 (351-406)||(5352331-5352386)
chr7 (364-407)||(12288372-12288415)
chr7 (334-405)||(32896451-32896522)
chr7 (369-406)||(37930046-37930083)
chr7 (357-406)||(48980489-48980538)
chr7 (362-406)||(24991783-24991827)
chr7 (370-406)||(34607010-34607046)
chr7 (366-406)||(37240097-37240137)
[»] chr8 (9 HSPs)
chr8 (334-403)||(1244692-1244761)
chr8 (334-406)||(17704015-17704087)
chr8 (334-406)||(33445572-33445644)
chr8 (337-387)||(5880974-5881024)
chr8 (357-407)||(8442497-8442547)
chr8 (340-406)||(30623295-30623361)
chr8 (361-406)||(13286133-13286178)
chr8 (334-406)||(27750891-27750963)
chr8 (334-406)||(44293577-44293649)
[»] chr6 (2 HSPs)
chr6 (362-406)||(26522474-26522518)
chr6 (364-406)||(788868-788910)
[»] chr1 (3 HSPs)
chr1 (364-403)||(15764037-15764076)
chr1 (357-406)||(28039870-28039919)
chr1 (334-406)||(40227831-40227903)
[»] scaffold0007 (1 HSPs)
scaffold0007 (353-402)||(202594-202643)
[»] scaffold0197 (1 HSPs)
scaffold0197 (334-406)||(21742-21814)


Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Original strand, 13484203 - 13484685
Alignment:
Q  14 cagagagaggaaaaccaaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaactta 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484203 cagagagaggaaaagcaaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaactta 13484302  T
Q  114 gaccccacaaatgtgttaaaagatttgcattattttatgctactacctctttactccttcattcctcacgtatatctatacacatatactttcatgcaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484303 gaccccacaaatgtgttaaaagatttgcattattttatgctactatctctttactccttcattcctcacgtatatctatacacatatactttcatgcaat 13484402  T
Q  214 cttattcttccctttgtgtaaaacgtatttactcaaatttacccatattataaatgaatatctaccaacaattataaatgaatctaaatattataatttg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484403 cttattcttccctttgtgtaaaacgtatttactcaaatttacccatattataaatgaatatctaccaacaattataaatgaatctaaatattataatttg 13484502  T
Q  314 ttacgtaaatattttgaaaatttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcgtgaaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484503 ttacgtaaatattttgaaaatttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcgtgaaaa 13484602  T
Q  414 caaattttttaattaacggatacatatgcaaacttttttaaattgtaagtgcaaaataatttaacttttgtgtattatatcat 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13484603 caaattttttaattaacggatacatatgcaaacttttttaaattgtaagtgaaaaataatttaacttttgtgtattatatcat 13484685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 17145352 - 17145406
Alignment:
Q  351 tcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagct 405  Q
    ||||| ||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  17145352 tcgaacctcagatcttgcatatattatacattgtctttaccaactgagttaagct 17145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 9123832 - 9123904
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||  |||| |||||  || ||||||  ||||||||||||||||||| |||||||||| |||||||    
T  9123832 tttgtggtgtctgaggttcgaacttcggatcttacatatattatgcattgtctttaccaactgagttaagctc 9123904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 18391674 - 18391602
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| |||||| ||||| ||| || |||| |||| |||||||||||| | |||||||||| |||||||    
T  18391674 tttgtggtggtcgaggttcgaacctcggaccttgcatattttatgcattgtccttaccaactgagctaagctc 18391602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 2002029 - 2001982
Alignment:
Q  359 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||| ||||||||||||||||| |||||| ||||||||| ||||||||    
T  2002029 cagaccttgtatatattatgcaatgtctttaccaactgaaataagctc 2001982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 7922264 - 7922309
Alignment:
Q  361 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  7922264 gatcttgcatatattatgcattgtctttaccaactgagataagctc 7922309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 19854639 - 19854567
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| ||||| ||||| | | ||||||| |||||||||||||||||   |||||||||| |||||||    
T  19854639 tttgtggtgtccgaggttcgaaccccggatcttgcatatattatgcattgtccataccaactgagctaagctc 19854567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 19908766 - 19908694
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| ||| || ||||| ||| || |||| ||||||||||||||||| | |||||||||| |||||||    
T  19908766 tttgtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctc 19908694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 33900736 - 33900780
Alignment:
Q  359 cagatcttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||    
T  33900736 cagatcttgcatatattatgcattgtccttaccaactgagataag 33900780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 24488493 - 24488427
Alignment:
Q  337 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    ||||||| ||||| || ||||||  | |||||||||||||||||||||| | |||||||||| ||||    
T  24488493 gtggtgtccgaggttcaaatctcgaaccttgtatatattatgcattgtcattaccaactgagttaag 24488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 47806246 - 47806304
Alignment:
Q  337 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaact 395  Q
    |||||||||| || ||||| | |||| |||| ||||||||||||||||| |||||||||    
T  47806246 gtggtgttcggggttcgaaccccagaccttgcatatattatgcattgtcctcaccaact 47806304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 10082476 - 10082407
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    ||||||||| |||||| | ||| |||| ||||||||||||||||| ||||||   |||||||||| ||||    
T  10082476 tttgtggtggtcgaggtttgaacctcatatcttgtatatattatgtattgtccctaccaactgagctaag 10082407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 11286787 - 11286840
Alignment:
Q  353 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| |||| ||||||||||||||||||  |||||||||  |||||||    
T  11286787 gaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctc 11286840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 9990336 - 9990292
Alignment:
Q  338 tggtgttcgaggatcgaatctcagatcttgtatatattatgcatt 382  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||||    
T  9990336 tggtgtccgaggttcgaacctcagatcttgcatatattatgcatt 9990292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 10519177 - 10519137
Alignment:
Q  366 tgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  10519177 tgtatatattatgcattgtctataccaactgagctaagctc 10519137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 12671735 - 12671799
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgag 398  Q
    ||||||||| |||||| ||||| | | ||||||| |||| |||||||||||||  ||||||||||    
T  12671735 tttgtggtggtcgaggttcgaaccccggatcttgcatattttatgcattgtctataccaactgag 12671799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 16432944 - 16432996
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtct 386  Q
    ||||||||| ||| || | ||| |||||||||| |||||||||||||||||||    
T  16432944 tttgtggtggtcggggtttgaacctcagatcttatatatattatgcattgtct 16432996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 38869505 - 38869574
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||||||||||  | |||||||||| ||||    
T  38869505 tttgtggtgttcgagtttcgaacctcggatcttgtatatattatgcattgttcttaccaactgagctaag 38869574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 13992718 - 13992675
Alignment:
Q  361 gatcttgtatatattatgcattgtcttcaccaactgagataagc 404  Q
    ||||||||||||||||||||||||| | |||||||||| |||||    
T  13992718 gatcttgtatatattatgcattgtccttaccaactgagctaagc 13992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 17588411 - 17588364
Alignment:
Q  359 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  17588411 cagatcttgcatatattatgcattgtccttaccaactgagttaagctc 17588364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 47377366 - 47377408
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  47377366 cttgtatatattatgcattgtccttaccaactgagttaagctc 47377408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 8113576 - 8113621
Alignment:
Q  361 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||    
T  8113576 gatcttgcatatattatgcattgtccttaccaactgagctaagctc 8113621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 31138465 - 31138420
Alignment:
Q  360 agatcttgtatatattatgcattgtcttcaccaactgagataagct 405  Q
    |||||||| ||||||||||||||||||  | |||||||||||||||    
T  31138465 agatcttgcatatattatgcattgtctctatcaactgagataagct 31138420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 43334518 - 43334571
Alignment:
Q  353 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| |||||||||||||||||| ||| | |||| ||||| |||||||    
T  43334518 gaatctcagaccttgtatatattatgcatggtccttaccagctgagttaagctc 43334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 5702166 - 5702236
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| | ||| ||||| |||| | |||| ||||||||||||||||||| |||||||||| |||||||    
T  5702166 tttgtggtgtcc-aggttcgaacctcaaaccttgcatatattatgcattgtctt-accaactgagctaagctc 5702236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 26768475 - 26768403
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| ||| || | ||| |||||| |||| |||| |||||||||||||  |||| |||||||||||||    
T  26768475 tttgtggtggtcggggtttgaagctcagaccttgcatattttatgcattgtctataccagctgagataagctc 26768403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 18324881 - 18324953
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||||  || |||||||  |||||||| ||||||||||||||||| | |||||||||| |||||||    
T  18324881 tttgtggtgttcagggttcgaatcctagatcttgcatatattatgcattgtccttaccaactgagttaagctc 18324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 24393319 - 24393247
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| || || ||||| |||||| |||| ||||||||||||||||| | | |||||||| |||||||    
T  24393319 tttgtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctc 24393247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 27934869 - 27934916
Alignment:
Q  359 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||||||| |||||| | |||||||||| |||||||    
T  27934869 cagatcttgtatatattatgtattgtccttaccaactgagctaagctc 27934916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 7413206 - 7413248
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  7413206 cttgtatatattatgcattgtccttaccaactgagctaagctc 7413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 9459070 - 9459116
Alignment:
Q  360 agatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||| ||||||||||||||||||||||| | |||||||| |||||||    
T  9459070 agattttgtatatattatgcattgtctttatcaactgagctaagctc 9459116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 37320534 - 37320576
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  37320534 cttgcatatattatgcattgtctttaccaactgagttaagctc 37320576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 40896527 - 40896568
Alignment:
Q  365 ttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||||||||||||||  |||||||||| |||||||    
T  40896527 ttgtatatattatgcattgtctataccaactgagctaagctc 40896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 44926423 - 44926460
Alignment:
Q  369 atatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  44926423 atatataatgcattgtctttaccaactgagataagctc 44926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 45032744 - 45032695
Alignment:
Q  357 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||| |||||||||||||||||   |||||||||| |||||||    
T  45032744 ctcagatcttgcatatattatgcattgtccctaccaactgaggtaagctc 45032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 3503048 - 3503000
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcatt 382  Q
    ||||||||||||  || |||||||||||| |||| ||||||||||||||    
T  3503048 tttgtggtgttcagggttcgaatctcagaccttgcatatattatgcatt 3503000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 12124619 - 12124555
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgag 398  Q
    ||||||||||| |||| ||||| | | || |||| ||||||||||||||||| | ||||||||||    
T  12124619 tttgtggtgtttgaggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgag 12124555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 19549500 - 19549460
Alignment:
Q  344 tcgaggatcgaatctcagatcttgtatatattatgcattgt 384  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  19549500 tcgaggttcgaatctcagaccttgcatatattatgcattgt 19549460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 34903591 - 34903519
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| || || ||||| |||||| |||| |||||||||||| |||| | |||||||||  |||||||    
T  34903591 tttgtggtgtccggggttcgaacctcagaccttgcatatattatgcactgtccttaccaactgaactaagctc 34903519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 34885922 - 34885876
Alignment:
Q  360 agatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||    
T  34885922 agatcttgcatatatcatgcattgtcttcaccaactgagctaagctc 34885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 5458058 - 5458130
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||| | ||||| |||| |||| ||||||||||||||||  | | |||||||| |||||||    
T  5458058 tttgtggtgttcgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagctc 5458130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 8683120 - 8683072
Alignment:
Q  358 tcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||||||    
T  8683120 tcagatcttgcatatattatgcattgtctataccaactgagctaagctc 8683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 5352386 - 5352331
Alignment:
Q  351 tcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| || ||||||||||||||| |||||| | |||||||||| |||||||    
T  5352386 tcgaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctc 5352331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 12288415 - 12288372
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataagctcg 407  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||    
T  12288415 cttgtatacattatgcattgtcctcaccaactgagttaagctcg 12288372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 32896451 - 32896522
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagct 405  Q
    ||||||||||  |||| ||||| | || |||||||||||||||||||||||| |  ||||||||| ||||||    
T  32896451 tttgtggtgtctgaggttcgaaccccaaatcttgtatatattatgcattgtccttcccaactgagttaagct 32896522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 37930083 - 37930046
Alignment:
Q  369 atatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  37930083 atatattatgcattgtccttaccaactgagataagctc 37930046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 48980538 - 48980489
Alignment:
Q  357 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||| |||||||||||||||||||||   |||||||||| |||||||    
T  48980538 ctcagatattgtatatattatgcattgtccataccaactgagctaagctc 48980489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 24991827 - 24991783
Alignment:
Q  362 atcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||| ||||||||||||||||| | |||||||||| |||||||    
T  24991827 atcttgcatatattatgcattgtccttaccaactgagctaagctc 24991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 34607010 - 34607046
Alignment:
Q  370 tatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  34607010 tatattatgcattatctttaccaactgagataagctc 34607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 37240097 - 37240137
Alignment:
Q  366 tgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||||||| |||||| |||||||||| |||||||    
T  37240097 tgtatatattatgcaatgtctttaccaactgagttaagctc 37240137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 1244692 - 1244761
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    |||||||||| || || ||||| | |||| |||||||||||||||||||||| | |||||||||| ||||    
T  1244692 tttgtggtgtccggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagctaag 1244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 17704087 - 17704015
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||  ||||| | ||||| |||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  17704087 tttgtggtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctc 17704015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 33445644 - 33445572
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||||  |||| |||||||||| | |||||||||||||||||||||    |||||||||| |||||||    
T  33445644 tttgtggtgtctgaggttcgaatctcaaaccttgtatatattatgcattgttcctaccaactgagctaagctc 33445572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 5880974 - 5881024
Alignment:
Q  337 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtctt 387  Q
    |||||||| |||| | |||||||| | ||||||||||||||||||||||||    
T  5880974 gtggtgtttgaggtttgaatctcaaaccttgtatatattatgcattgtctt 5881024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 8442497 - 8442547
Alignment:
Q  357 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcg 407  Q
    |||||| |||| ||||||||||||||||| | |||||||||| ||||||||    
T  8442497 ctcagaccttgcatatattatgcattgtccttaccaactgagttaagctcg 8442547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 30623361 - 30623295
Alignment:
Q  340 gtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||| || ||||| | |||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  30623361 gtgttcggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagctc 30623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 13286178 - 13286133
Alignment:
Q  361 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||| ||||||||||||||||||  |||||||||| |||||||    
T  13286178 gatcttgcatatattatgcattgtctataccaactgagctaagctc 13286133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 27750891 - 27750963
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||| |||||||||| ||||| | | || |||| |||||||||||| |||| | |||||||||| |||||||    
T  27750891 tttgtagtgttcgaggttcgaaccccggaccttgcatatattatgcactgtccttaccaactgagctaagctc 27750963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 44293649 - 44293577
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| ||  || ||||| | ||||||||  ||||||||||||||||||  |||||||||| |||||||    
T  44293649 tttgtggtggtcagggttcgaaccccagatcttacatatattatgcattgtctataccaactgagctaagctc 44293577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 26522518 - 26522474
Alignment:
Q  362 atcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||||||||||||||||||||| | |||||||||| |||||||    
T  26522518 atcttgtatatattatgcattgtccttaccaactgagctaagctc 26522474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 788910 - 788868
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||| ||||||||||||||||| | ||||||||||||||||||    
T  788910 cttgcatatattatgcattgtccttaccaactgagataagctc 788868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 15764076 - 15764037
Alignment:
Q  364 cttgtatatattatgcattgtcttcaccaactgagataag 403  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  15764076 cttgtatatattatgcattgtccttaccaactgagataag 15764037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 28039870 - 28039919
Alignment:
Q  357 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    |||||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  28039870 ctcagaccttgcatatattatgcattgtccttaccaactgagttaagctc 28039919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 40227903 - 40227831
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| ||| || ||||| | |||| ||||||||| ||||||||||||   |||||||||| |||||||    
T  40227903 tttgtggtggtcggggttcgaaccccagaccttgtatattttatgcattgtccataccaactgagctaagctc 40227831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 202643 - 202594
Alignment:
Q  353 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataa 402  Q
    |||||||||| ||| |||||||||||||| ||||| || |||||||||||    
T  202643 gaatctcagaccttatatatattatgcatcgtcttaactaactgagataa 202594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 21742 - 21814
Alignment:
Q  334 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 406  Q
    ||||||||| |||||  | ||| |||| | ||||||||| |||||||||||||  |||||||||| |||||||    
T  21742 tttgtggtggtcgagatttgaacctcataccttgtatattttatgcattgtctataccaactgagctaagctc 21814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University