View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_12 (Length: 504)
Name: NF18003_low_12
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_12 |
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| [»] scaffold0147 (4 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 4670 - 4200
Alignment:
| Q |
17 |
ccataggctttgtcaaaactcggagatcggagagtttcatcattgcaagggcaaaatcttgatggaacaaagtacgattagatgcgtattgaacccaata |
116 |
Q |
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| T |
4670 |
ccataggctttgtcaaaactcggagatcggagagtttcatcattgcaagggcaaaatcttgatggaacaaagtacgattagatgcgtattgaacccaata |
4571 |
T |
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| Q |
117 |
tctggttttttccccttccattagctgctgatcttcatagaggattcctttaccttgtaatagtctgcggtagtataacgtcccgaaattcgatagagat |
216 |
Q |
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| T |
4570 |
tctggttttttccccttccatcagctgctgatcttcatagaggattcctttaccttgtaatagtctgcggtagtataacgtcccgaaattcgatagagat |
4471 |
T |
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| Q |
217 |
tccccggagtccgtagtgatttcttgttgctcttcaactaaggaagaaggtgaggcatgtgatgaatatgctgatgctgaagtggataatgcatcagttt |
316 |
Q |
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| T |
4470 |
tccccggagtccgtagtgatttcttgttgctcttcaactaaggaagaaggtgaggcatgtgatgaatatgctgatgctgaagtggataatgcatcagttt |
4371 |
T |
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| Q |
317 |
cattgcattttgatcttagtacatttagaaattcagtatccaaagaagtgtcaggttcattagttccactgaagttatagagacagttttcgaagaattt |
416 |
Q |
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| T |
4370 |
cattgcattttgatcttagtacatttagaaattgagtatccaaagaagggtcaggttcattagttccactgaagttatagagacagttttcgaagaattt |
4271 |
T |
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| Q |
417 |
acaggggattacaccaatgctgtgggcacctggaaggtaaaaatggacagattaagtcatcaggaacaatg |
487 |
Q |
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| T |
4270 |
acaggggattacaccaatgctgtgggcacctggaaggtaaaaatggacagattaagtcatcaggaacaatg |
4200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 12422 - 12082
Alignment:
| Q |
17 |
ccataggctttgtcaaaactcggagatcggagagtttcatcattgcaagggcaaaatcttgatggaacaaagtacgattagatgcgtatt---gaaccca |
113 |
Q |
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| T |
12422 |
ccataggctttgtcaaaactcggagatcggagagtttcatcattgcaagggcaaaatcttgatggaacaaagtacgattagatgcgtattcttgaaccca |
12323 |
T |
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| Q |
114 |
atatctggttttttccccttccattagctgctgatcttcatagaggattcctttaccttgtaatagtctgcggtagtataacgtcccgaaattcgataga |
213 |
Q |
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| T |
12322 |
gtatctggttttttccccttccattagctgctgaactgcatagaggattcctttaccttgtaatagtccgcggtggtgtaacgtcccgaaattcgttaga |
12223 |
T |
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| Q |
214 |
gattccccggagtccgtagtgatttcttgttgctcttcaactaaggaagaaggtgaggcatgtgatgaatatgctgatgctgaagtggataatgcatcag |
313 |
Q |
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| T |
12222 |
gattccccggagtccatagtgatttcttgttgctcttcaactaaggaagaagttgaggcatgtgatgaatatgctgatgctgacgtggataatgcatcac |
12123 |
T |
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| Q |
314 |
tttcattgcattttgatcttagtacatttagaaattcagta |
354 |
Q |
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| T |
12122 |
tttccttgcatcttgatcttagtacatttagaaattcagta |
12082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 184 - 354
Target Start/End: Complemental strand, 12076 - 11906
Alignment:
| Q |
184 |
cggtagtataacgtcccgaaattcgatagagattccccggagtccgtagtgatttcttgttgctcttcaactaaggaagaaggtgaggcatgtgatgaat |
283 |
Q |
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||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12076 |
cggtagtgtaacgtcccaaaattcgttagagattccccggagtccatagtgatttcttgttgctcttcaactaaggaagaagttgaggcatgtgatgaat |
11977 |
T |
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| Q |
284 |
atgctgatgctgaagtggataatgcatcagtttcattgcattttgatcttagtacatttagaaattcagta |
354 |
Q |
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| T |
11976 |
atgctgatgctgacgtggataatgcatcagtttccttgcatcttgatcttagtacatttagaaattcagta |
11906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 11905 - 11865
Alignment:
| Q |
369 |
aggttcattagttccactgaagttatagagacagttttcga |
409 |
Q |
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| T |
11905 |
aggttcattagttccattgaagttatagagacggttttcga |
11865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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