View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_13 (Length: 502)
Name: NF18003_low_13
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 4316118 - 4316480
Alignment:
| Q |
16 |
ataaacaacttcaaaactaacttcaacaatgtgaatactnnnnnnnntcttaataagattgggaatgaaaatgagtgttcctttctcttcaaaactctat |
115 |
Q |
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| T |
4316118 |
ataaacaacttcaaaactaacttcaacaatgtgaatactaaaaaaaatcttaataagattgggaatgaaaatgagtgttcctttctcttcaaaactctgt |
4316217 |
T |
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| Q |
116 |
tccaaaaacatatctttaagaaatcatgaacaccaaagtgaggcaatattaaccataataaatattaaaatcaacaaaaccactacagatgaccaaatgg |
215 |
Q |
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| T |
4316218 |
tccaaaaacatatctttaagaaatcatgaacaccaaagtgaggcaatattaaccataataaatattaaaatcaacaaaaccactacagatgaccaaatgg |
4316317 |
T |
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| Q |
216 |
caatgtagcaactctgttgattgttttattcaactagatatacatgtttccaataagcataataagataaatattgtgttcaaatttattgctcttccca |
315 |
Q |
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| T |
4316318 |
caatgtagcaactctgttgattgttttattcaactagatatacatgtttccaataagcataataagataaatattgtgttcaaatttattgctcttccca |
4316417 |
T |
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| Q |
316 |
atctttcaaggaaattacggaataataaaactctagtagaaagatcattcttcaaatttcttt |
378 |
Q |
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| T |
4316418 |
atctttcaaggaaattacggaataataaaactctagtagaaagaccattcttcaaatttcttt |
4316480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 4316485 - 4316544
Alignment:
| Q |
431 |
tcaaagataaagttatagaaaacttacataaaaaatcatcataagaattgcaacacaggt |
490 |
Q |
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| T |
4316485 |
tcaaagataaagttatagaaaacttacataaaaaatcatcataagaattgcaacacaggt |
4316544 |
T |
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