View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_15 (Length: 495)
Name: NF18003_low_15
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 6174061 - 6173610
Alignment:
| Q |
15 |
attctcctattgattattccgaatataagaaaatccttgaagaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcaca |
114 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6174061 |
attctcctatcgactattctgaatataagaaaatccttgaagaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcaca |
6173962 |
T |
|
| Q |
115 |
tgcttctcaatctacaccacaagcagaagccactgaaactcagagtgagtcagtcaagatgctgcttgatgaattaagggagttggtattttcaagaaac |
214 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
6173961 |
ggcttctcaatctacgccacaagctgaagctactgaaactcagagtgagtcaatcaagatgctgctggatgaattaagggatttggtattttcaagaaac |
6173862 |
T |
|
| Q |
215 |
ctattgaaacatttactcaatgatgtgactcttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaa |
314 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
6173861 |
ttattgaaacatttacccaatgatgtgactcttggagaagaggtgaaagctttattagttaaactcaattatagagctaatgagctttctgagaaacaaa |
6173762 |
T |
|
| Q |
315 |
gttctggtattactgatttcaccaaaatctttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttcttaatgtgga |
414 |
Q |
| |
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|||||||||||||||||||| ||| |||||| | ||| |||| |||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| |
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| T |
6173761 |
gttctggtattactgatttcgccagaatcttcacagaagccacagtgaatattgatgaaggaaaactgggcaatgttactcttcaacatcttaatgtgga |
6173662 |
T |
|
| Q |
415 |
tcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
466 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
6173661 |
tcataaagattcaatgtccaagcttcaagcatccaaatacaagattatgaag |
6173610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 6136000 - 6135555
Alignment:
| Q |
15 |
attctcctattgattattccgaatataagaaaatccttgaagaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcaca |
114 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6136000 |
attctcctattgattattctgaatacaagagaatccttgaagaagaccctttggcaatcatggacaaactcttatctggtgaacttggtcattcttcaca |
6135901 |
T |
|
| Q |
115 |
tgcttctcaatctacaccacaagcagaagccactgaaactcagagtgagtcagtcaagatgctgcttgatgaattaagggagttggtattttcaagaaac |
214 |
Q |
| |
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|| ||||||||||| |||||||||||| ||||||||| ||||| |||| | ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
6135900 |
gactcctcaatctacagaacaagcagaagctactgaaactgagagta------tcaaaacgctgcttgatgaattgagggagttggcattttcaagaaac |
6135807 |
T |
|
| Q |
215 |
ctattgaaacatttactcaatgatgtgactcttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaa |
314 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
6135806 |
ttattgaaacatttacccaatgatgtgactctaggagaagaggtgaaagctttattagttaaactcaattatagagctaatgagctttctgagaaacaaa |
6135707 |
T |
|
| Q |
315 |
gttctggtattactgatttcaccaaaatctttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttcttaatgtgga |
414 |
Q |
| |
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|||| ||||||||||||||||| | |||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
6135706 |
gttccggtattactgatttcactagaatcttcacagaagctacagtgaatattgatgaaggaaaactgagcaatgttactcttcaacaacttaatgtgga |
6135607 |
T |
|
| Q |
415 |
tcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
6135606 |
tcataaagattcaatatccaagcttcaagcatcgaaagacaagataatgaag |
6135555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 168 - 466
Target Start/End: Complemental strand, 37616577 - 37616288
Alignment:
| Q |
168 |
tcaagatgctgcttgatgaattaagggagttggtattttcaagaaacctattgaaacatttactcaatgatgtgactcttggagaagaggtgaaagcttt |
267 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
37616577 |
tcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacatttacccaaa---------cttggagaagaggtgaaagcttt |
37616487 |
T |
|
| Q |
268 |
gttagttaaattcaattctagagctaatgagctttctgagaaacaaagttctggtattactgatttcaccaaaatctttatagactacacattgaatatt |
367 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
37616486 |
gttagttaaattcaattatagagctaatgagctttctgagaaacaaagttctggtattattgttttcaccaaaatctttatagacaccacattgaatatt |
37616387 |
T |
|
| Q |
368 |
gatgaaagaaaactgagcaatgttactcttaaacttctt-aatgtggatcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
466 |
Q |
| |
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|||||| |||||| |||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
37616386 |
gatgaaggaaaaccgagcaatgttacccttaaacatcttaaatgtggatcataaagtttcaatatccaagcttcaagca-ataaagacaagataatgaag |
37616288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 22083133 - 22083191
Alignment:
| Q |
407 |
aatgtggatcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22083133 |
aatgtggatcataaagattcaatatccaagcttcaagca-ataaagacaagataatgaag |
22083191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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