View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_16 (Length: 490)
Name: NF18003_low_16
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 52631682 - 52631228
Alignment:
| Q |
16 |
cagttattgcgtgtctctctctataaattgagaggatttgtatctgaaatccgagacacacacagagttatgactcggactcccattcatcacataattc |
115 |
Q |
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| T |
52631682 |
cagttattgcgtgtctctctctataaattgagaggatttgtatctgaaatccgagacacacacagagttatgactcggactcccattcatcacataattc |
52631583 |
T |
|
| Q |
116 |
acaaccaacagtcacaccacacttactttcttttcttttattctttctgacatatatataatatactcgttcctcaagaagatactcctcactaaattgc |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52631582 |
acaaccaacagtcacaccacactttctttcttttcttttattctttctgacatatata-------ctcgttcctcaagaagatactcctcactaaattgc |
52631490 |
T |
|
| Q |
216 |
acctatactatagagattaaaaagaaagaaatgtaaggtagctagctagagagaagaaagtgagaccgagcagcaagaatcttcttttatctcatttctg |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631489 |
acctatactatagagattaaaaagaaagaaatctaaggtagctagctagagagaagaaagtgagaccgagcagcaagaatcttcttttatctcatttctg |
52631390 |
T |
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| Q |
316 |
caaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtcaatccacaacacaacgctgctccaagattttgttctctttggacctagttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631389 |
caaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtcaatccacaacacaacgctgctccaagattttgttctctttggacctagttt |
52631290 |
T |
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| Q |
416 |
cccaacattttttctttctataacccacttttcttattaatcttttctagctaattacatat |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631289 |
cccaacattttttctttctataacccacttttcttattaatcttttctagctaattacatat |
52631228 |
T |
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