View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_17 (Length: 469)
Name: NF18003_low_17
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 21395366 - 21394970
Alignment:
| Q |
13 |
attattcttggaaaaaatataactctagtgtggttattggtcttttaaatatatttttattattgtttctagtctagaattgttagttatcctacgaaga |
112 |
Q |
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| T |
21395366 |
attattcttaaaaaaaatataactctagtgtggttattggtcttttaaatatatttttattattgtttccagtctag-----ttagttatcccacgaaga |
21395272 |
T |
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| Q |
113 |
atccactatcgccatgaagtgccgcactcgtaagttctcttgctagataattaggtctgcatttttcatttttaaaagaaaatattattatcatctacat |
212 |
Q |
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| T |
21395271 |
atccactatcgccatgaagtgccgcactcgtaagttctcttgctagatagttaggtctgcatttt-catttttaaaagaaaatattattatcatctacat |
21395173 |
T |
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| Q |
213 |
ttacatttagaataatataaagcaatcaaaca-aggtaagagacttggatcccttaaaatatataaccataggttcgcttcatggttatgcagaaattta |
311 |
Q |
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| T |
21395172 |
ttacatttagaataatataaagcaaccaaacccaggcaagagatttggatcccttaaaatatataatcatgggttcgctttgtggttatgcagaaattta |
21395073 |
T |
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| Q |
312 |
attggaagagaagaatctattttatgttactcacagattttctaacgatcagtcagcgctaaccgacaatggaaatttcatactactatcatgataatca |
411 |
Q |
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| T |
21395072 |
attggaagagaagaatctattttctgttattcatagattttccaacgatcagtcgatgctaaccgataatgaaaatttcatactaatatcatgataatca |
21394973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 21394946 - 21394912
Alignment:
| Q |
432 |
agaaaacatggagttagttaatcttccattttcca |
466 |
Q |
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| T |
21394946 |
agaaaacatggagttagttaatcttccattttcca |
21394912 |
T |
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