View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_18 (Length: 463)
Name: NF18003_low_18
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_18 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 40435869 - 40436319
Alignment:
| Q |
8 |
tgaaaagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtg |
107 |
Q |
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| T |
40435869 |
tgaaaagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggtttgataaaatgtg |
40435968 |
T |
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| Q |
108 |
cagagcttaaaccaccacaagcaacatgaatgttatgttagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgcca |
207 |
Q |
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| T |
40435969 |
cagagcttaaaccaccacaagcaacatgaatgtta-----gagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgcca |
40436063 |
T |
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| Q |
208 |
ttaattgatctagctgaactttggtttatctgaacaataatcattaaccaaataaaacaaaacaaattgattgcaacacaaggaatnnnnnnnttctatg |
307 |
Q |
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| T |
40436064 |
ttaattgatctagctgaactttggtttatctgaacaataatcattaaccaaataaaacaaaacaaattgattgcaacacaagcaataaaaaaattctatg |
40436163 |
T |
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| Q |
308 |
tgttctgagaatttatattaattcattgatcacctgcaacaaaaaggagcaatcccagtaggaacaataacgaggttacgatcgaatgtgattccattga |
407 |
Q |
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| T |
40436164 |
tgttctgagaatttatattaattcattgatcacctgcaacaaaaaggagcaatcccagtaggaacaataacgaggttacgatcgaatgtgattccattga |
40436263 |
T |
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| Q |
408 |
gatacaaatcaacttagaaatcttaatactgattatgattattatctatctaacta |
463 |
Q |
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| T |
40436264 |
gatacaaatcaacttagaaatcttaatactgattatgattattatctatctaacta |
40436319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 40432296 - 40432456
Alignment:
| Q |
49 |
attaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcagagcttaaaccaccacaagcaacatgaatgttatgttag |
148 |
Q |
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| T |
40432296 |
attaacaagacaatcattatacttgaggcgtttgaaaatattagggttgataagacgtacagagccgaacttgccacaagcaacatgaatgtcaa----- |
40432390 |
T |
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| Q |
149 |
agattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaattg |
214 |
Q |
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| T |
40432391 |
aaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattg |
40432456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 416
Target Start/End: Original strand, 40433805 - 40433889
Alignment:
| Q |
332 |
attgatcacctgcaacaaaaaggagcaatcccagtaggaacaataacgaggttacgatcgaatgtgattccattgagatacaaat |
416 |
Q |
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| T |
40433805 |
attgatcacctgctataataatgagcgaccccaataggtacaaggacaaggttaagattgaacgtgattccattgagatacaaat |
40433889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 14473274 - 14473354
Alignment:
| Q |
31 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcaga |
111 |
Q |
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| T |
14473274 |
ttgaagagtcttgccattattaacaagacaatccttattattgaggcgtttgaaaattgttgggttgataaaatgtgcaga |
14473354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 40912682 - 40912753
Alignment:
| Q |
31 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaa |
102 |
Q |
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| T |
40912682 |
ttgaagagtattgccattattcacatgaaaatcattattattgaggtgtttgaaaattgttgggttgataaa |
40912753 |
T |
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