View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_19 (Length: 461)
Name: NF18003_low_19
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 29195906 - 29195458
Alignment:
| Q |
1 |
acatttaatagtatcagggctcccaagttatcaaagttttactggaatgatttaccaatgcgacctgatacattattaggcattcagnnnnnnnnn-cta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29195906 |
acatttaatagtatcagggctcccaagttatcaaagttttactggaatgatttaccaatgcgacctgatacattattaggcattcagaaaaaaaaaacta |
29195807 |
T |
|
| Q |
100 |
atgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttctaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29195806 |
atgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttctaaat |
29195707 |
T |
|
| Q |
200 |
gtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgactttta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29195706 |
gtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgactttta |
29195607 |
T |
|
| Q |
300 |
cagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctattaaagctcctcaattattg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29195606 |
cagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctattaaagctcctcaattattg |
29195507 |
T |
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| Q |
400 |
aatcttttttggaacgtaactaggaatgaagaaatcccacatgcctttg |
448 |
Q |
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| T |
29195506 |
aatcttttttggaacgtaactaggaatgaagaaatcccacatgcctttg |
29195458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 97 - 381
Target Start/End: Original strand, 29204609 - 29204884
Alignment:
| Q |
97 |
ctaatgccacctgatgtgttttgtggaataaaaaacttgacaaaaattgtgttggttcaagttcttgtgccaaaagattttctgcctagtttgttttcta |
196 |
Q |
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|||||||| |||||||||||||||||||| ||| |||||||||||||||||| | |||| ||||| |||||| || | ||||||||||||||||||| |
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| T |
29204609 |
ctaatgccgcctgatgtgttttgtggaatgggaaaattgacaaaaattgtgttgtgtaaagtccttgtaccaaaatatgtcctgcctagtttgttttcta |
29204708 |
T |
|
| Q |
197 |
aatgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatattatcaatccaacgttgcgtcgtttgaatatagttgactt |
296 |
Q |
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| T |
29204709 |
attgtcaccaacttgagga------------gggatgcacattcgagttttccatccatattatcagtccaacattgcgtcggttgagcataattgactt |
29204796 |
T |
|
| Q |
297 |
ttacagtgtttcttggaactta---gacattgatgcattgaatctaacttccttagactgtcgaggtcagatgaggatatgttctatt |
381 |
Q |
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| ||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||| |||| |
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| T |
29204797 |
tgacaatgttccttggaacttagacgacattgatgcattgaatataacttccttagactatagaggtcaaatgaggatatgttgtatt |
29204884 |
T |
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