View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_23 (Length: 442)
Name: NF18003_low_23
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 34577916 - 34577510
Alignment:
| Q |
16 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
115 |
Q |
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| T |
34577916 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
34577817 |
T |
|
| Q |
116 |
aatcatgtgctgatgaccnnnnnnnattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
215 |
Q |
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| T |
34577816 |
aatcatgtgctgatgacctttttttattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
34577717 |
T |
|
| Q |
216 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccnnnnnnngaaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34577716 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccaaaaaaagaaata |
34577617 |
T |
|
| Q |
316 |
cgtaaagtttttgctaagaagtacactaacggtatttgcttcttttgattacaggaagtaacagtatatttacatagaaaggaaaaatgaaacgtataat |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34577616 |
cgtaaag-ttttgctaagaagtacactaacggtatttgcttcttttgattacaggaagtaacggtatatttacatagaaaggaaaaatgaaacgtataat |
34577518 |
T |
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| Q |
416 |
atctatac |
423 |
Q |
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|||||||| |
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| T |
34577517 |
atctatac |
34577510 |
T |
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