View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_25 (Length: 435)
Name: NF18003_low_25
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 43224089 - 43224316
Alignment:
| Q |
10 |
ccaagaatataaacgacatgagaacnnnnnnnntgctcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatat |
109 |
Q |
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| T |
43224089 |
ccaagaataaaaacgacatgagaacaaaaaaaatgctcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---t |
43224185 |
T |
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| Q |
110 |
tgtagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaac |
209 |
Q |
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| T |
43224186 |
tgtagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaac |
43224285 |
T |
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| Q |
210 |
aaccatcgttaatttcctgatgccacaaaat |
240 |
Q |
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| T |
43224286 |
aatcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 294 - 418
Target Start/End: Original strand, 43224465 - 43224589
Alignment:
| Q |
294 |
tatcgaaaggggtttctttttatttggtacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaacagtagaattgtgaccatcaatg |
393 |
Q |
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| T |
43224465 |
tatcgaaaggggtttctttttatttggcacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaactgtagaattgtgaccatcaatg |
43224564 |
T |
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| Q |
394 |
agaattttggggatatcaaggttat |
418 |
Q |
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| T |
43224565 |
aaatttttggggatatcaaggttat |
43224589 |
T |
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