View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_29 (Length: 415)

Name: NF18003_low_29
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_29
NF18003_low_29
[»] chr7 (2 HSPs)
chr7 (107-399)||(35646842-35647134)
chr7 (17-60)||(35646640-35646683)
[»] chr4 (3 HSPs)
chr4 (274-397)||(41070998-41071119)
chr4 (278-394)||(42697655-42697774)
chr4 (217-272)||(41070859-41070913)
[»] chr5 (1 HSPs)
chr5 (17-105)||(19534316-19534404)
[»] chr8 (1 HSPs)
chr8 (71-105)||(35704340-35704374)
[»] chr1 (1 HSPs)
chr1 (13-105)||(27293518-27293610)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 107 - 399
Target Start/End: Original strand, 35646842 - 35647134
Alignment:
Q  107 ataaaatagaaaatatcacgaaaagaaaacacnnnnnnngaacaaatttgcttttgggatactctttctctcctccatcgattttccttcaatccaattc 206  Q
    ||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646842 ataaaatagaaaatatcacgaaaagaaaatattttttttgaacaaatttgcttttgggatactctttctctcctccatcgattttccttcaatccaattc 35646941  T
Q  207 aaaatatctatttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgtattaagttgaatctgtattttttgtttgcaaact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646942 aaaatatctatttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgtattaagttgaatctgtattttttgtttgcaaact 35647041  T
Q  307 aagagaactaggaaggctggcatcgttggcaaatatggtatgtatgaaatctgataacttctgtgttttgatcattgttatttgcttgttgct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35647042 aagagaactaggaaggctggcatcgttggcaaatatggtatgtatgaaatctgataacttctgtgttttgataattgttatttgcttgttgct 35647134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35646640 - 35646683
Alignment:
Q  17 tggttaaatgaactgtattcataaactgaatcaaactggaccac 60  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  35646640 tggttaaatgaactgtatacataaactgaatcaaattggaccac 35646683  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 41070998 - 41071119
Alignment:
Q  274 ttaagttgaatctgtattttttgtttgcaaactaagagaactaggaaggctggcatcgttggcaaatatggtatgtatgaaatctgataacttctgtgtt 373  Q
    ||||||||||| |||| ||||| |  ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41070998 ttaagttgaatatgtactttttct--gcagactaagagaactaagaaggctggcatcgttggcaaatatggtatgtctgaaatctgataacttctctgat 41071095  T
Q  374 ttgatcattgttatttgcttgttg 397  Q
    ||| ||||||||||||| ||||||    
T  41071096 ttggtcattgttatttgtttgttg 41071119  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 394
Target Start/End: Complemental strand, 42697774 - 42697655
Alignment:
Q  278 gttgaatctgtatttt-ttgtttgcaaactaagagaactaggaaggctggcatcgttggcaaatatggtatgtatgaaatctgataact--tctgtgttt 374  Q
    |||||||||||| ||| || |||||| ||||||||||| | |||||||||||||||||||||||| ||||||| || ||||||| ||||  |||||||||    
T  42697774 gttgaatctgtactttattttttgcagactaagagaacaaagaaggctggcatcgttggcaaatacggtatgtctgtaatctgacaacttctctgtgttt 42697675  T
Q  375 tgatcattgttatttgcttg 394  Q
    | || | ||| |||||||||    
T  42697674 tcattactgtcatttgcttg 42697655  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 41070859 - 41070913
Alignment:
Q  217 tttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgt 272  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  41070859 tttcaattttt-taagcttcgttttctaccatgtatatttagaatcacagaaacgt 41070913  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 19534316 - 19534404
Alignment:
Q  17 tggttaaatgaactgtattcataaactgaatcaaactggaccacnnnnnnncaaaaccatattaaatggtttatgaactgaaccacaaa 105  Q
    ||||||| |||| ||||| ||||| ||||| |||||||||||||       |  |||||||||||||||||||||||||||||||||||    
T  19534316 tggttaactgaattgtatccataagctgaaccaaactggaccacaaaaaaactgaaccatattaaatggtttatgaactgaaccacaaa 19534404  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 35704340 - 35704374
Alignment:
Q  71 aaccatattaaatggtttatgaactgaaccacaaa 105  Q
    |||||||||||||||||||||||||||||||||||    
T  35704340 aaccatattaaatggtttatgaactgaaccacaaa 35704374  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 27293518 - 27293610
Alignment:
Q  13 aatatggttaaatgaactgtattcataaactgaatcaaactggaccacnnnnnnncaaaaccatattaaatggtttatgaactgaaccacaaa 105  Q
    ||||||||||| |||| || || |||| ||||||||||||||| ||||          |||||||||||||| ||||||||||||||||||||    
T  27293518 aatatggttaactgaattgcatccatacactgaatcaaactgggccacaaaaaaattgaaccatattaaatgatttatgaactgaaccacaaa 27293610  T

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