View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_3 (Length: 598)
Name: NF18003_low_3
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 34172913 - 34173494
Alignment:
| Q |
1 |
cattttcatgtcgtttgtatgagaaagatgctgtactaataagaatcatccaaataaattcttccaaatgcataactcatttggtaaaaagttgcagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34172913 |
cattttcatgtcgtttgtatgagaaagatgctgtactaataagaatcatccaaataaattcttccaaatgcataactcatttggtaaaaagttgcagaaa |
34173012 |
T |
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| Q |
101 |
tatttgatatgttgggcgattcattcccaccctatgagtataaaaagttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173013 |
catttgatatgttgggcgattcattcccaccctatgagtataaaaagttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtac |
34173112 |
T |
|
| Q |
201 |
ttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttcgtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173113 |
ttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttcgtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaaaga |
34173212 |
T |
|
| Q |
301 |
agcataaaacaaatcaatgcacttcaaaagcacacaggtctcacatataaacaaaatcatcacacaaataagacctaaaagatacaatgttctcgagttt |
400 |
Q |
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| T |
34173213 |
agcataaaacaaatcaatgcacttcaaaagcacacaggtctcacatataaacaaaatcatcacacaaataagacctaaaagatacaatgttctcgagttt |
34173312 |
T |
|
| Q |
401 |
cattgcaatgttgacaagtagttagtcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaacatgaccctaatcttatagcttctca |
500 |
Q |
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| T |
34173313 |
cattgcaatgttgacaagtagttagtcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaacatgaccctaatcttatagcttctca |
34173412 |
T |
|
| Q |
501 |
aatcagaaatgtaattctcgtattatcaactcaatttgacacaaagaaacgaacagatcctaacacctatagcacaatttgt |
582 |
Q |
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| T |
34173413 |
aatcagaaatgtaattctcgtattatcaactcaatttgacacaaagaaacgaacagatcctaacacctatagcacaatttgt |
34173494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 43051827 - 43051678
Alignment:
| Q |
148 |
ttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttc |
247 |
Q |
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|||||||||||||||| |||||||| |||| ||||||||| || |||||||| |||| | | ||||||||| ||| ||||| |||||||| || ||||| |
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| T |
43051827 |
ttaccttcttcccacggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttc |
43051728 |
T |
|
| Q |
248 |
gtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaa |
297 |
Q |
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||| ||||||||||| ||| |||| |||| | |||||||| ||| |||| |
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| T |
43051727 |
gtcaaaatctttcataatatcagtgttctcttgaggcttaatctgaaaaa |
43051678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 43055579 - 43055532
Alignment:
| Q |
149 |
taccttcttcccacgaatgacagctccaggctctccttgaataaccat |
196 |
Q |
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| T |
43055579 |
taccttcttccctcgaatgacagctccaggttcaccttgaatcaccat |
43055532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 33128678 - 33128628
Alignment:
| Q |
426 |
tcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaaca |
476 |
Q |
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||||||||||||||| | |||||| |||||||||| |||||||||||||| |
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| T |
33128678 |
tcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca |
33128628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 34290170 - 34290120
Alignment:
| Q |
426 |
tcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaaca |
476 |
Q |
| |
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|||| ||||| |||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
34290170 |
tcataataagcgtttatgctgtaaattgcaaataagatgtttatccaaaca |
34290120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 474
Target Start/End: Complemental strand, 16451069 - 16451021
Alignment:
| Q |
426 |
tcatgataagtgtttattctgtaaactgcaaataatatgtttatccaaa |
474 |
Q |
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||||||| |||| |||| |||||| |||||||||| ||||||||||||| |
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| T |
16451069 |
tcatgatcagtgcttatgctgtaagctgcaaataagatgtttatccaaa |
16451021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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