View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_30 (Length: 412)

Name: NF18003_low_30
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_30
NF18003_low_30
[»] chr5 (5 HSPs)
chr5 (235-398)||(30421364-30421527)
chr5 (70-167)||(30421199-30421296)
chr5 (301-349)||(8879371-8879419)
chr5 (291-348)||(5007935-5007993)
chr5 (305-349)||(5738471-5738514)
[»] chr6 (2 HSPs)
chr6 (275-387)||(5885854-5885966)
chr6 (275-357)||(6944803-6944887)
[»] chr1 (1 HSPs)
chr1 (275-349)||(6495977-6496051)
[»] chr3 (2 HSPs)
chr3 (275-352)||(30367101-30367178)
chr3 (302-350)||(50191763-50191811)
[»] chr8 (1 HSPs)
chr8 (292-357)||(4904283-4904347)
[»] chr2 (3 HSPs)
chr2 (291-347)||(27713503-27713559)
chr2 (291-351)||(29299266-29299325)
chr2 (295-349)||(36943509-36943563)
[»] chr7 (2 HSPs)
chr7 (291-349)||(29450476-29450533)
chr7 (275-346)||(48534869-48534941)
[»] scaffold0263 (1 HSPs)
scaffold0263 (275-348)||(5912-5985)
[»] chr4 (2 HSPs)
chr4 (291-352)||(53562750-53562810)
chr4 (305-349)||(37339021-37339064)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 30421364 - 30421527
Alignment:
Q  235 tgtatttcaataatttttattatttcgatacannnnnnnatttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaagga 334  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30421364 tgtatttcaataatttttattatttcgatacatttttttatttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaagga 30421463  T
Q  335 ggaaaaagagtacaaataggcactacaaaacagaccgcagcgcactaccaaagacaaacttgat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30421464 ggaaaaagagtacaaataggcactacaaaacagaccgcagcgcactaccaaagacaaacttgat 30421527  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 30421199 - 30421296
Alignment:
Q  70 gtgtgaggtgatgtcattatagaatttgaatgcatgaatatcacaaaaacatctcaaagtgctttttgttagtaattttatggatgaaattgactaat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30421199 gtgtgaggtgatgtcattatagaatttgaatgcatgaatatcacaaaaacatctcaaagtgctttttgttagtaattttatggatgaaattgactaat 30421296  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 8879419 - 8879371
Alignment:
Q  301 cggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8879419 cggctagcacaaggtgcacttaaccggcaaaggaggaaaaagagtacaa 8879371  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 5007935 - 5007993
Alignment:
Q  291 ttattaggctcggctagcacaagatgcacttaaccggc-gaaggaggaaaaagagtaca 348  Q
    |||||| || |||||||||||||||||| |||||||||  |||||||||||||||||||    
T  5007935 ttattaagcacggctagcacaagatgcaattaaccggcaaaaggaggaaaaagagtaca 5007993  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 5738514 - 5738471
Alignment:
Q  305 tagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  5738514 tagcacaagatgcacttaacccgc-aaggaggaaaaagagtacaa 5738471  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 5885966 - 5885854
Alignment:
Q  275 tttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaataggcactacaaaacagaccgcag 374  Q
    |||||||||||||   | ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||  ||||    
T  5885966 tttgaatcagcaaatataattaggctcggctagcataagatgcacttaaccggctatggaggaaaaagagtacaaataggcaccacaaaacagaaggcag 5885867  T
Q  375 cgcactaccaaag 387  Q
    | ||||| |||||    
T  5885866 cacactaacaaag 5885854  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 6944803 - 6944887
Alignment:
Q  275 tttgaatcagcaacat-ttattaggctcggctagcacaagatgcacttaaccggcgaaggagg-aaaaagagtacaaataggcac 357  Q
    ||||||||||||| || ||||||||||| | |||||||||| ||||  ||||||| |||| || |||||||||||||||||||||    
T  6944803 tttgaatcagcaaaatattattaggctcagttagcacaagacgcacaaaaccggcaaaggggggaaaaagagtacaaataggcac 6944887  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 6496051 - 6495977
Alignment:
Q  275 tttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    |||||||||||||   ||||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||||    
T  6496051 tttgaatcagcaaatattattaggctcagctagcacaagatgcacttaactggcaaaggagaaaaaagagtacaa 6495977  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 30367178 - 30367101
Alignment:
Q  275 tttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaata 352  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||  ||| ||||||||| ||||||||||||||||    
T  30367178 tttgaatcagcaaattttattaagctaggctagcacaagatgcactatacccgcgaaggagaaaaaagagtacaaata 30367101  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 50191763 - 50191811
Alignment:
Q  302 ggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaa 350  Q
    |||||||||||||||||||  ||| || |||||||||||||||||||||    
T  50191763 ggctagcacaagatgcactatacccgcaaaggaggaaaaagagtacaaa 50191811  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 4904347 - 4904283
Alignment:
Q  292 tattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaataggcac 357  Q
    |||||||| |||||||||||||  |||||| |||||| |||||||||||||||||||| |||||||    
T  4904347 tattaggcacggctagcacaaggagcacttgaccggc-aaggaggaaaaagagtacaattaggcac 4904283  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 27713503 - 27713559
Alignment:
Q  291 ttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtac 347  Q
    |||||| || |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  27713503 ttattaagcacggctagcacaaggagcactaaaccggcgaaggaggaaaaagagtac 27713559  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 29299325 - 29299266
Alignment:
Q  291 ttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaat 351  Q
    |||||| ||| |||||||| | ||||||||||||| || ||||||||||||||||||||||    
T  29299325 ttattaagctaggctagcataggatgcacttaacccgc-aaggaggaaaaagagtacaaat 29299266  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 36943509 - 36943563
Alignment:
Q  295 taggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    |||||| ||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  36943509 taggctaggctagtgcaaggtgcacttaacccgcaaaggaggaaaaagagtacaa 36943563  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 29450476 - 29450533
Alignment:
Q  291 ttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    ||||||||| |||||||||||||  |||||| |||||| ||||||||||||||||||||    
T  29450476 ttattaggcacggctagcacaaggagcacttgaccggc-aaggaggaaaaagagtacaa 29450533  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 48534941 - 48534869
Alignment:
Q  275 tttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggc-gaaggaggaaaaagagta 346  Q
    |||||||| |||| | |||||| ||| ||||||||||| |||||||||||| ||  |||||||||||||||||    
T  48534941 tttgaatcggcaaaaattattaagctaggctagcacaatatgcacttaacccgcaaaaggaggaaaaagagta 48534869  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 5912 - 5985
Alignment:
Q  275 tttgaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtaca 348  Q
    |||||| |||||| |||||||| ||  ||| ||||||||| | ||| |||| ||| ||||||||||||||||||    
T  5912 tttgaaacagcaaaatttattaagcaaggcaagcacaagaagtactaaacccgcggaggaggaaaaagagtaca 5985  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 53562810 - 53562750
Alignment:
Q  291 ttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaaata 352  Q
    ||||||||| ||| |||||||||||||||  |||| || | |||||||||||||||||||||    
T  53562810 ttattaggcacggatagcacaagatgcaccaaacctgc-acggaggaaaaagagtacaaata 53562750  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 37339064 - 37339021
Alignment:
Q  305 tagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 349  Q
    |||||||||||||||||| || || ||||||||||||||||||||    
T  37339064 tagcacaagatgcacttatcccgc-aaggaggaaaaagagtacaa 37339021  T

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