View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_low_34 (Length: 392)
Name: NF18003_low_34
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 34231168 - 34231532
Alignment:
| Q |
18 |
gctcttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34231168 |
gctcttcaatcgatctttctctctggttactcttaatcttagagagacaatcttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaa |
34231267 |
T |
|
| Q |
118 |
gagctagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattcc |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34231268 |
gagctagatatgtcatataatgaccaccttgaaggccaacttccagaattgagctgtagtacttctctcattactttggatctctcaggttgtggattcc |
34231367 |
T |
|
| Q |
218 |
aaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacgtctgtcagggaaccacctaaatggttcaattccatccacaattttaac |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34231368 |
aagggtcaattcctctgtctttttctaaccttacacgtcttgcctccctacgtctgtcagggaaccacctaaacggttcaattccatccacaattttaac |
34231467 |
T |
|
| Q |
318 |
cttttcacatcttacctttctgtatctcgatgacaatgtactcagtggtcaaatgccggattctt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
34231468 |
cttttcacatcttacctttctgtatctcgatgacaatgtactcaatggtcaaatcccggattctt |
34231532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 306
Target Start/End: Original strand, 41570422 - 41570658
Alignment:
| Q |
70 |
ttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagctagatatgtcacataatgaccaccttgaaggccaacttccagatatga |
169 |
Q |
| |
|
||||||||||| | |||||| | ||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||| |||||||||||| ||| |
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|
| T |
41570422 |
ttaagtggaaattggaaaaataacattctttgtttaccaaatattcaagagctagatatgtcaaagaatgataaccttgaaggtcaacttccagatttga |
41570521 |
T |
|
| Q |
170 |
gctgcagtacttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacg |
269 |
Q |
| |
|
|||| || |||||||| | | ||||||||| ||| |||| |||| |||| |||||||||| ||||| |||||||| ||| | || |||||||| | |
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|
| T |
41570522 |
gctgtagcacttctcttagaatcttggatctttcatattgtctattcaaagggccaattcctctttctttctctaacctcacatattttacttccctaag |
41570621 |
T |
|
| Q |
270 |
tctgtcagggaaccacctaaatggttcaattccatcc |
306 |
Q |
| |
|
||| || |||| |||| ||||||||||| |||||| |
|
|
| T |
41570622 |
tctcatagagaacaaccttaatggttcaatcccatcc |
41570658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 42125240 - 42125073
Alignment:
| Q |
18 |
gctcttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaa |
117 |
Q |
| |
|
||||||||| ||||||| |||| |||||||||||||||||| | ||| |||| ||||||| |||||| ||| | ||||||||||||||||||||| |
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|
| T |
42125240 |
gctcttcaaccaatcttcctctttggttactcttaatcttaaatcaacaggattaactggaaaactgaaaagaagcctactttgtttaccaagtattcaa |
42125141 |
T |
|
| Q |
118 |
gagctagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctct |
185 |
Q |
| |
|
||| ||||||||||| ||||| || |||||||||| ||||| ||||| |||| || ||||||||||| |
|
|
| T |
42125140 |
gagttagatatgtcatataatcacaaccttgaaggacaactaccagaattgagttgtagtacttctct |
42125073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 42118675 - 42118562
Alignment:
| Q |
19 |
ctcttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaag |
118 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||| ||| | |||||||||||||| || ||| |
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|
| T |
42118675 |
ctcttcaaccaatcttcctctttggttactcttaatcttgcagagacaggattaagtggaaaactgaaaagaagcctactttgtttaccaagcatggaag |
42118576 |
T |
|
| Q |
119 |
agctagatatgtca |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42118575 |
agctagatatgtca |
42118562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 42130422 - 42130234
Alignment:
| Q |
70 |
ttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagctagatatgtcacataatgaccaccttgaaggccaacttccagatatga |
169 |
Q |
| |
|
||||| |||||| |||||| ||| || |||||||| |||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||| ||| |
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|
| T |
42130422 |
ttaagcggaaaactgaaaagaagccttatttgtttagcaagtattcaagagctagatatgtcatataatgatgaacttcaaggccaacttccagaattga |
42130323 |
T |
|
| Q |
170 |
gctgcagtacttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtctt |
258 |
Q |
| |
|
| || || |||||||| | | | | ||| | ||||| |||| |||| |||| ||||||| ||| |||||||||||| |||| |||| |
|
|
| T |
42130322 |
gttgtagcacttctcttagaatcatagatttgtcaggatgtgcattcgaaggggaaattcctatgtatttttctaacctcacacatctt |
42130234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 41712142 - 41712388
Alignment:
| Q |
18 |
gctcttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaa |
117 |
Q |
| |
|
|||||||||||| |||| | || |||| |||||||||||| ||| ||| ||||| ||||| | ||||| | |||||| || |||||| | |||||| |
|
|
| T |
41712142 |
gctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaaccttaaaaataacattctctgcttaccaggcattcaa |
41712241 |
T |
|
| Q |
118 |
gagctagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattcc |
217 |
Q |
| |
|
|| |||||||||||||| ||| | ||||| |||| | ||||| || ||||||| ||| ||||||||| || |||| |||||||| ||| ||||| |
|
|
| T |
41712242 |
gaactagatatgtcacaaaatttcaaccttcaaggtaagcttcctgaactgagctgtagtgcttctctcagtaacttgcatctctcaaactgtcaattcc |
41712341 |
T |
|
| Q |
218 |
aaggatcaattcctctgtctttttctaaccttacacgtcttgcttcc |
264 |
Q |
| |
|
||||| |||||||| ||| |||||| ||||| |||| |||| ||||| |
|
|
| T |
41712342 |
aaggaccaattcctttgtatttttcgaacctcacacatcttacttcc |
41712388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 34239225 - 34239318
Alignment:
| Q |
179 |
cttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacgtct |
272 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||| | ||||||| | ||||||| ||||| || ||||| ||||||||| ||| |||| |||| |
|
|
| T |
34239225 |
cttctctcatttccttggatctcacagattgtgaactccaagggcctattcctccatctttctccaacctcacacgtcttactttcctaagtct |
34239318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 12250069 - 12249789
Alignment:
| Q |
19 |
ctcttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaag |
118 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||||||| | ||| |||||||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
12250069 |
ctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctctttgtttgccaagtattcaag |
12249970 |
T |
|
| Q |
119 |
agctagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattcca |
218 |
Q |
| |
|
||||||| |||||| | ||| | ||||| ||||| | ||||| || |||| |||| | ||| ||||| |||||| |||||||||| |||||||||||| |
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|
| T |
12249969 |
agctagacatgtcagagaattcctaccttcaaggcgagcttcctgaattgagttgcaatgcttttctcactaccttagatctctcagattgtggattcca |
12249870 |
T |
|
| Q |
219 |
aggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacgtctgtcagggaaccacctaaatggttcaat |
299 |
Q |
| |
|
||| ||||||||||||| ||||||||| | |||| |||| |||| || |||| |||| ||||| || ||||||||||| |
|
|
| T |
12249869 |
agggccaattcctctgtccttttctaacttcacacatcttaattccataagtctctcagaaaaccaacttaatggttcaat |
12249789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 25521386 - 25521619
Alignment:
| Q |
22 |
ttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagc |
121 |
Q |
| |
|
||||| ||||||| |||| |||||||||| ||||||| | ||| ||||| |||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
25521386 |
ttcaaccaatcttcctctttggttactctaaatcttaaatcaacaggattaagaggaaaattcaaaaggagcattctttgtttaccaagtattcaagaaa |
25521485 |
T |
|
| Q |
122 |
tagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattccaagg |
221 |
Q |
| |
|
||||||||||| |||||| | ||| ||||||||||||| || ||||||| || |||||||| | | |||||| | |||| |||||||||| |||| |
|
|
| T |
25521486 |
tagatatgtcatttaatgatgaacttcaaggccaacttccggaattgagctgtagcacttctcttagaatattggatttgtcagcttgtggattcgaagg |
25521585 |
T |
|
| Q |
222 |
atcaattc---ctctgtctttttctaaccttaca |
252 |
Q |
| |
|
||||| || |||||||||||||||||||| |
|
|
| T |
25521586 |
ggaaattcctactatgtctttttctaaccttaca |
25521619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 8524694 - 8524463
Alignment:
| Q |
22 |
ttcaatcaatctttctctctggttactcttaatcttagagagacaaccttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagc |
121 |
Q |
| |
|
||||| ||||||| |||| |||| |||||||||||| |||||||| ||||| |||||| |||||| ||| |||||||||||||| |||||||||| | |
|
|
| T |
8524694 |
ttcaaccaatcttcctctttggtcactcttaatcttgcagagacaagattaagcggaaaactgaaaagaagccttctttgtttaccaggtattcaagaac |
8524595 |
T |
|
| Q |
122 |
tagatatgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattccaagg |
221 |
Q |
| |
|
||||||||||| |||||| | ||| |||||||||||||||| | || |||| |||||||| | | ||||||||| ||| |||| |||||| || |
|
|
| T |
8524594 |
tagatatgtcatttaatgatgaacttcaaggccaacttccagaattaagttgcaacacttctcttagaatcttggatctgtcaaattgtcaattccatgg |
8524495 |
T |
|
| Q |
222 |
atcaattcctctgtctttttctaaccttacac |
253 |
Q |
| |
|
|||||| |||||||||||||||| |||| |
|
|
| T |
8524494 |
ggaaattccaatgtctttttctaacctaacac |
8524463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 317
Target Start/End: Complemental strand, 11119974 - 11119727
Alignment:
| Q |
70 |
ttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagctagatatgtcacataatgaccaccttgaaggccaacttccagatatga |
169 |
Q |
| |
|
|||||||| || |||||||| | | ||||||||||||||||||||||||||||| ||||||| ||||| | || ||||||||||||||||||| ||| |
|
|
| T |
11119974 |
ttaagtgggaacttgaaaaataactttctttgtttaccaagtattcaagagctatatatgtcggataatcccaactttgaaggccaacttccagaattga |
11119875 |
T |
|
| Q |
170 |
gctgcagtacttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacg |
269 |
Q |
| |
|
| ||||| | |||||| | | ||| ||||| |||| |||| ||||||||| ||||||| | |||||||||||||| ||| |||| | || || |
|
|
| T |
11119874 |
gttgcagcatttctcttagaatcttagatctgtcagtttgtcaattccaagggaaaattcctatttctttttctaacctcgcacatcttacctctttaat |
11119775 |
T |
|
| Q |
270 |
tctgtcagggaaccacctaaatggttcaattccatccacaattttaac |
317 |
Q |
| |
|
||| ||| | |||| |||||| |||||||| |||||| || ||||||| |
|
|
| T |
11119774 |
tctctcaagtaaccgcctaaacggttcaatcccatcctcacttttaac |
11119727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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