View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_low_38 (Length: 365)
Name: NF18003_low_38
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 28259033 - 28258676
Alignment:
| Q |
11 |
caaaggtatctcccaaacatattgtatactcagtcgatgaaagatttttactatcgggacagtaaaatccataacccaactcacgtgcattggtagatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28259033 |
caaaggtatctcccaaacatattgtatactcagtcgatgaaagatttttactatcgggacagtaaaatccataacccaactcacgtgcattggtagatgt |
28258934 |
T |
|
| Q |
111 |
agttacatagatattcatattatttggaagaagtccttcaaatatgctcgcagaataacatgcttccacatatatcacctgtttat-------------- |
196 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
28258933 |
agctacatagatactcatattatttggaagaagcccttcaaataagctcgcagaataacatgcttccacatatatcacctattttttattgaatgaatta |
28258834 |
T |
|
| Q |
197 |
---aatggaat-aaca-ttttgaattaccttagttgatttggtggttttttattttattgtcaatctaaaatatacaaggttactcaccannnnnnngta |
291 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
28258833 |
gtcaatggaataaacatttttgaattaccttagttgatttggtggttttttattttactgtcaatgtaaaatattcaaggttactcaccatttttttgta |
28258734 |
T |
|
| Q |
292 |
agaattagaagcatgttttttcttcaaagcatccacgaaatcttttgcataaacaatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28258733 |
agaattagaagcatgttttttcttcaaagcatccacgaaatcttttgcataaacaatg |
28258676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 29928492 - 29928136
Alignment:
| Q |
11 |
caaaggtatctcccaaacatattgtatactcagtcgatgaaagatttttactatcgggacagtaaaatccataacccaactcacgtgcattggtagatgt |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29928492 |
caaaggtatctcccaaacatgttgtatactcagtcgatgaaagatttatactgcccggacagtaaaatccataacccaactcacgtgcattggcagatgt |
29928393 |
T |
|
| Q |
111 |
agttacatagatattcatattatttggaagaagtccttcaaatatgctcgcagaataacatgcttccacatatatcacctgtttat-----aatggaat- |
204 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
29928392 |
agttacatagatgcttatattatttggaagaagtccttcgaataagctcgcagaataacatgcttccacatatatcacctatttttcattgaatggaatt |
29928293 |
T |
|
| Q |
205 |
-------------aacattttgaattaccttagttgatttggtggttttttatttta-ttgtcaatctaaaatatacaaggttactcaccannnnnnngt |
290 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| || |
|
|
| T |
29928292 |
aatcaatgaaataaatattttgaattaccttggttgatttggtggttttttattttatttgtcaatgtaaaatattcaaggatactcaccatttttttgt |
29928193 |
T |
|
| Q |
291 |
aagaattagaagcatgttttttcttcaaagcatccacgaaatcttttgcataaacaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29928192 |
aagaattagaagcatgttttttcttcaaagcatccaccaaatcttttgcataaacaa |
29928136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 11326806 - 11326725
Alignment:
| Q |
109 |
gtagttacatagatattcatattatttggaagaagtccttcaaatatgctcgcagaataacatgcttccacatatatcacct |
190 |
Q |
| |
|
||||||||||| || || |||| |||||||||||| |||||||| |||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
11326806 |
gtagttacataaatgtttatatcatttggaagaagaccttcaaacatgctcccagcttcacatgcttccatgtatatcacct |
11326725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University