View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_39 (Length: 356)
Name: NF18003_low_39
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 36512281 - 36512624
Alignment:
| Q |
1 |
aaaattgaaatagatagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttat |
100 |
Q |
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| T |
36512281 |
aaaattgaaatagatagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttat |
36512380 |
T |
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| Q |
101 |
actcaaaattaccacttttgacgtgataaggaaagtcggaatcgtcatacttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctg |
200 |
Q |
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| T |
36512381 |
actcaaaattaccacttttgacgtgataaggaaagtcggaatcgtcatacttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctg |
36512480 |
T |
|
| Q |
201 |
ttccggtttcgattccacgagatctccatctgatttctgttccaatcccgaccctgattcctgtttcaacagtttctgttccattctctgttcaggttcc |
300 |
Q |
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| T |
36512481 |
ttccggtttcgattccacgagatctccatctgatttctgttccaatcccgatcctgattcctgtttcaacagtttctgttccattctctgttcaggttcc |
36512580 |
T |
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| Q |
301 |
aaattcagcccatttctccccttatttatgggcgattttcttgg |
344 |
Q |
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| T |
36512581 |
aaattcagcccatttctccccttatttatgggcgattttgttgg |
36512624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 36808510 - 36808369
Alignment:
| Q |
15 |
tagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattacca |
114 |
Q |
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| T |
36808510 |
tagatagatgcgtacacttaggttgtgagacttctccttatatatttgaatttgagcctt--gcttcctatatgcctcattcttatactcaaaattacca |
36808413 |
T |
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| Q |
115 |
cttttgacgtgataaggaaagtcggaatcgtcatacttagagaa |
158 |
Q |
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| T |
36808412 |
cgtttgccgtaatatggaaagtcggaatcgtcatgcttagagaa |
36808369 |
T |
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