View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_4 (Length: 593)

Name: NF18003_low_4
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_4
NF18003_low_4
[»] chr7 (5 HSPs)
chr7 (23-476)||(34293005-34293468)
chr7 (475-577)||(34567371-34567473)
chr7 (23-153)||(32979455-32979585)
chr7 (505-577)||(34292860-34292932)
chr7 (24-170)||(10365992-10366137)
[»] scaffold0725 (1 HSPs)
scaffold0725 (23-170)||(1297-1444)
[»] scaffold0088 (1 HSPs)
scaffold0088 (23-170)||(27213-27360)
[»] chr1 (3 HSPs)
chr1 (24-170)||(47896880-47897026)
chr1 (24-167)||(8039422-8039562)
chr1 (24-170)||(27786483-27786629)
[»] chr6 (3 HSPs)
chr6 (23-170)||(9566998-9567146)
chr6 (24-89)||(11366920-11366985)
chr6 (95-170)||(11366980-11367054)
[»] chr3 (2 HSPs)
chr3 (24-170)||(11387658-11387804)
chr3 (24-170)||(46742669-46742815)
[»] scaffold0005 (1 HSPs)
scaffold0005 (24-153)||(270547-270676)
[»] chr8 (2 HSPs)
chr8 (24-170)||(38499409-38499555)
chr8 (24-168)||(10182276-10182419)
[»] chr2 (1 HSPs)
chr2 (24-170)||(1533485-1533631)
[»] chr5 (1 HSPs)
chr5 (521-577)||(15897084-15897140)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 23 - 476
Target Start/End: Complemental strand, 34293468 - 34293005
Alignment:
Q  23 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa 122  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34293468 taagtcagtctcttctctccaccgatccaccaaaacagcattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctatcaacgccaa 34293369  T
Q  123 aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgcgacg----------aaaaaagttgtcaccgtttcgaagaggaacactaagtg 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  34293368 aatcgtgccctactccaccacaacacaccaatagaaaatagaacacgcgacaggtcgaaacaaaaaaagttgtcaccgtttcgaagaggaacactaagtg 34293269  T
Q  213 aaactctcacacataaaattgatgttattgaatgagtgaaactctaagtgtaactctcacacttaaaattgannnnnnnnnnnnnactgtaaatcctata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||    
T  34293268 aaactctcacacataaaattgatgttattgaatgagtgaaactctaagtgtaactctcacacttaaaattgatattattttttttactgtaaatcctata 34293169  T
Q  313 tgaatatttaaaattgatattaaggcatgaatgattactagaaaaatagaactaatgagtactgagatgcgataatctaacaaaggattgatctcattct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34293168 tgaatatttaaaattgatattaaggcatgaatgattactagaaaaatagaactaatgagtactgagatgcgataatctaacaaaggattgatctcattct 34293069  T
Q  413 gtagataaaataaagaaatgaagtctcattctatagacaaaaaggaatttgaatttatagttct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34293068 gtagataaaataaagaaatgaagtctcattctatagacaaaaaggaatttgaatttatagttct 34293005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 577
Target Start/End: Complemental strand, 34567473 - 34567371
Alignment:
Q  475 ctatttttcctttagatatataaacatttattatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaa 574  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34567473 ctatttttcctttagatatataaacatttattatttcacataaaggaagatggattgtcttactgaattgggaaaggaaactgtcacaaaattgggagaa 34567374  T
Q  575 ttg 577  Q
    |||    
T  34567373 ttg 34567371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 32979455 - 32979585
Alignment:
Q  23 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa 122  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||||| || || ||| ||||||    
T  32979455 taagtcagactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgcacaaccaccatgtcatcaccaccttcacctcctatcaccgccaa 32979554  T
Q  123 aatcgtgccctactacaccacaacacaccaa 153  Q
    || | || |||||| ||||||||||||||||    
T  32979555 aaccatgacctactccaccacaacacaccaa 32979585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 34292932 - 34292860
Alignment:
Q  505 ttatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattg 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34292932 ttatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattg 34292860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 10365992 - 10366137
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||||||||| ||||||||||||||||||||| || |||  ||||||||| ||||||||| || ||||||||||||||||| ||||| ||| |  ||||    
T  10365992 aagtcagactcttctctccaccgatccaccaaa-cagcatcatcgacaccattgcaaaacctccgcgtcatcaccaccttcaccttctatcatctgcaaa 10366090  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    | ||||||||||| ||||||||||| |||  |||||||| |||||||    
T  10366091 accgtgccctactccaccacaacaccccaccagaaaataaaacacgc 10366137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 1297 - 1444
Alignment:
Q  23 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa 122  Q
    ||||||||| || |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||    
T  1297 taagtcagattcttctctccaccgatccaccaaaacagcatcatcgacaccactgcaaaaccaccacgtcatcaccctcttcaccttctatcaacgccaa 1396  T
Q  123 aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||||    
T  1397 aatcgtgccctaatccaccacaacacaccaatagaaaataaaacacgc 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 27213 - 27360
Alignment:
Q  23 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa 122  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||    
T  27213 taagtcagattcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaatcaccacgtcatcaccctcttcaccttctatcaacgccaa 27312  T
Q  123 aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  27313 aatcgtgccctactccaccacagcacaccaatagaaaataaaacacgc 27360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 47896880 - 47897026
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  |||| ||| |||||||    
T  47896880 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactacaaaaccaccacgtcatcaccaccttcacgttctatcatcgccaaa 47896979  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    | ||||||||||| |||||||||||||||| |||||||| |||||||    
T  47896980 accgtgccctactccaccacaacacaccaacagaaaataaaacacgc 47897026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 8039422 - 8039562
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    |||||| |||| |||||||| ||||||||||||||| |||  ||||||||| |||||||||||| ||||||||||||||||| ||||| ||| |||||||    
T  8039422 aagtcatactcttctctccatcgatccaccaaaacatcatcttcgacaccattgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa 8039521  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaaca 167  Q
    | | ||||| |||   |||||||||||||  |||||||| ||||    
T  8039522 accttgccccact---ccacaacacaccaccagaaaataaaaca 8039562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 27786629 - 27786483
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||| ||||| |||||| || |||||||||||||| ||| |||| |||||||| |||| |||||||| ||||||||||||| || || | | ||| |||    
T  27786629 aagtcggactcttctctcaactgatccaccaaaacatcatcgtcgccaccactgtaaaatcaccacgttatcaccaccttcacctcctataatcgcaaaa 27786530  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    |  ||| |||||| |||||||||||||||| | ||||||||||||||    
T  27786529 actgtgacctactccaccacaacacaccaacaaaaaatagaacacgc 27786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 9566998 - 9567146
Alignment:
Q  23 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccacc-ttcatcttctgtcaacgcca 121  Q
    ||||| |||||| |||||||| |||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  9566998 taagttagactcttctctccatcgattcaccaaaacagcatcgtcgacaccactgcaaaaccaccacgtcgtcaccacctttcaccttctatcaacgcca 9567097  T
Q  122 aaatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  9567098 aaatcgtgccctactccaccacaacacaccaatataaaataaaacacgc 9567146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11366920 - 11366985
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccac 89  Q
    ||||||||||  ||||||||| |||||||||||||| ||| || ||||||||||||||||||||||    
T  11366920 aagtcagacttttctctccactgatccaccaaaacagcatcgttgacaccactgcaaaaccaccac 11366985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 11366980 - 11367054
Alignment:
Q  95 caccaccttcatcttctgtcaacgccaaaatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    ||||||||||| ||||| ||| |||||||| |||||||| || |||||||||| ||||| | |||||| |||||||    
T  11366980 caccaccttcaccttctatcatcgccaaaaccgtgccctcctccaccacaaca-accaacaaaaaataaaacacgc 11367054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 11387658 - 11387804
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| || ||||    
T  11387658 aagtcagactcttctctccaccgatccaccaaaacagcatagtcgacaccactgcaaaaccaccacgtcatcatcaccttcaccttctatcatcgtcaaa 11387757  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    ||| |||| |||| ||||||||||||| || |||||||| |||||||    
T  11387758 atcatgccatactccaccacaacacacaaacagaaaataaaacacgc 11387804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 46742815 - 46742669
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||| ||||| |||||||||| ||||||||||||| ||| |||| ||||| || |||| |||||||||||||||||||||| |||   ||| |||||||    
T  46742815 aagtcggactcttctctccaccaatccaccaaaacagcatcgtcgccaccattgtaaaatcaccacgtcatcaccaccttcaccttacatcaccgccaaa 46742716  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    |   || |||||| |||||||||||||||| ||||||||||||||||    
T  46742715 actatgacctactccaccacaacacaccaacagaaaatagaacacgc 46742669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 270547 - 270676
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  270547 aagtcagactcttctctccaccgatccaccaaaacagtatcgtcgacaccactgcaaaaccaccacgtcatcaccaccttcaccttctatcatcgccaaa 270646  T
Q  124 atcgtgccctactacaccacaacacaccaa 153  Q
    | ||||||||||| ||||||||||| ||||    
T  270647 accgtgccctactccaccacaacacgccaa 270676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 38499409 - 38499555
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| || |||||| ||||| ||| |||||||    
T  38499409 aagtcagactcttctctccaccgatccaccaaaacaacatcgtcgacagcactacaaaaccaccacgtcatcgccgccttcaccttctatcatcgccaaa 38499508  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    | ||||||||||| ||| |||||||||||| | |||||| |||||||    
T  38499509 accgtgccctactccactacaacacaccaacaaaaaataaaacacgc 38499555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 10182276 - 10182419
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||| ||||| |||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||| || || ||| |||||||    
T  10182276 aagtcggactcttctctccaccgatccaccaaaa-agcatcgtcgccaccactgcaaaaccaccacgtcatcaccaccttcacctcctatcaccgccaaa 10182374  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacac 168  Q
    | |||| |||||| |||||||||||||||| ||||||||||||||    
T  10182375 accgtgacctactccaccacaacacaccaacagaaaatagaacac 10182419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 1533485 - 1533631
Alignment:
Q  24 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa 123  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||| |||   ||| |||||||    
T  1533485 aagtcggactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgtaaaaccaccacgtcatcaccaccttcaccttacatcaccgccaaa 1533584  T
Q  124 atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc 170  Q
    |   || |||||| |||||||||||||||| ||||||||||||||||    
T  1533585 actatgacctactccaccacaacacaccaacagaaaatagaacacgc 1533631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 15897140 - 15897084
Alignment:
Q  521 aagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattg 577  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  15897140 aagatggattgccttactgaattgggaaaagaagctgtcacaaaattgggacaattg 15897084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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