View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_41 (Length: 351)
Name: NF18003_low_41
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 11169419 - 11169742
Alignment:
| Q |
13 |
aatatttggctaataatgataaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcat |
112 |
Q |
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| T |
11169419 |
aatatttggctaataatggtaaccaacgattcttttttttgttcacgggatgtccaaccatagtaccttcttgcacacaatgtccctcatcctttatcat |
11169518 |
T |
|
| Q |
113 |
ctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagacc |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169519 |
ctttataacaattggatcaaacacacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagacc |
11169618 |
T |
|
| Q |
213 |
aaatcagttgcgttattgatgttttccttttcttttaaggaaagcttcgagctaatatccggatcatttatgaaatcccttatattgtatgcgtacttct |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |
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| T |
11169619 |
aaatcagttgcgttattgatgtttgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctcatattgtatgcgtacatct |
11169718 |
T |
|
| Q |
313 |
ctagtgcatttctcgcttcaacct |
336 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11169719 |
ctagtgcatttctcgcttcaacct |
11169742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 82 - 336
Target Start/End: Original strand, 11274872 - 11275126
Alignment:
| Q |
82 |
cttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
181 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
182 |
aaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgttttccttttcttttaaggaaagcttcgagctaatatccggatcattt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
11274972 |
aaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgttttccttttcttttaatgaaagcttcgagataatatcgggatcattt |
11275071 |
T |
|
| Q |
282 |
atgaaatcccttatattgtatgcgtacttctctagtgcatttctcgcttcaacct |
336 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11275072 |
atgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacct |
11275126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 11208241 - 11208564
Alignment:
| Q |
13 |
aatatttggctaataatgataaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcat |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |
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| T |
11208241 |
aatatttggctaataatggtaaccaacgattcttctttttcttcactggatgcccaaccatagtaccttcttccacaccatgcccctcatcctttatcat |
11208340 |
T |
|
| Q |
113 |
ctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagacc |
212 |
Q |
| |
|
||| | || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||| ||||||||||| | |||||| |
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| T |
11208341 |
cttcaaaataattggatcaaacacacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagacc |
11208440 |
T |
|
| Q |
213 |
aaatcagttgcgttattgatgttttccttttcttttaaggaaagcttcgagctaatatccggatcatttatgaaatcccttatattgtatgcgtacttct |
312 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| | |||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
11208441 |
aaatcaactgcgttattgatcttttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttct |
11208540 |
T |
|
| Q |
313 |
ctagtgcatttctcgcttcaacct |
336 |
Q |
| |
|
||||||||||||||| |||||||| |
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|
| T |
11208541 |
ctagtgcatttctcgattcaacct |
11208564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 173 - 336
Target Start/End: Original strand, 11165352 - 11165515
Alignment:
| Q |
173 |
ttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgttttccttttcttttaaggaaagcttcgagctaatatcc |
272 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||| ||| |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
11165451 |
T |
|
| Q |
273 |
ggatcatttatgaaatcccttatattgtatgcgtacttctctagtgcatttctcgcttcaacct |
336 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11165452 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagtgcatttctcgcttcaacct |
11165515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 129 - 317
Target Start/End: Complemental strand, 11242205 - 11242016
Alignment:
| Q |
129 |
tcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| | |||||||||| | |||| |||| |
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|
| T |
11242205 |
tcaaacacacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgctttat |
11242107 |
T |
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| Q |
229 |
tgatgttttcc--ttttcttttaaggaaagcttcgagctaatatccggatcatttatgaaatcccttatattgtatgcgtacttctctagt |
317 |
Q |
| |
|
| || |||||| ||||| ||| | ||||||||||||| ||||||| |||||||||| || |||||| |||||||| ||||||| |||| |
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| T |
11242106 |
taatcttttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttctttagt |
11242016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 331
Target Start/End: Original strand, 11195606 - 11195905
Alignment:
| Q |
32 |
taaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaattgggtca |
131 |
Q |
| |
|
||||||| ||| ||| || ||||| |||| || ||||||||| |||| ||||||| |||||| | |||||| |||||| |||| | | || || ||| |
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|
| T |
11195606 |
taaccaatgattctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatca |
11195705 |
T |
|
| Q |
132 |
aacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattga |
231 |
Q |
| |
|
|| |||||||||||||||||| ||||| | ||||| | || |||||| |||||||| ||||| || |||||| | |||||||||||| |||| ||||||| |
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|
| T |
11195706 |
aatacacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacgttaacatcgagccacatgaagaccaaatcaattgctttattga |
11195805 |
T |
|
| Q |
232 |
tgttttccttttcttttaaggaaagcttcgagctaatatccggatcatttatgaaatcccttatattgtatgcgtacttctctagtgcatttctcgcttc |
331 |
Q |
| |
|
| ||||||||||||||| | |||||| || | ||||| ||| ||||||||| || ||| || |||||||| |||||||||| | ||| ||||||||| |
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|
| T |
11195806 |
tcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttc |
11195905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 336
Target Start/End: Original strand, 11155193 - 11155463
Alignment:
| Q |
66 |
ccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaa |
165 |
Q |
| |
|
||||||||| |||| ||||||| |||||| | |||||| |||||| |||| | | || || ||||| |||||||||||||||||| ||||| | |||| |
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|
| T |
11155193 |
ccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaa |
11155292 |
T |
|
| Q |
166 |
aatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgttttccttttcttttaaggaaagcttcgagct |
265 |
Q |
| |
|
| | || |||||| |||| ||| ||||| || |||||| |||||||||||||| ||| |||||||| ||||||||||||||| | |||||| || | || |
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|
| T |
11155293 |
attgttcttgttccgcaatcacgttaacatcgagccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaact |
11155392 |
T |
|
| Q |
266 |
aatatccggatcatttatgaaatcccttatattgtatgcgtacttctctagtgcatttctcgcttcaacct |
336 |
Q |
| |
|
||||||| ||||||||| || ||| || |||||||| ||| |||||||| || ||||||||| |||| |
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|
| T |
11155393 |
aatatccttatcatttatagcattcctcatgttgtatgcatacgtctctagtacaactctcgcttctacct |
11155463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 11273229 - 11273292
Alignment:
| Q |
13 |
aatatttggctaataatgataaccaacgatacttctttttcttcactggatgtccaaccatagta |
77 |
Q |
| |
|
||||||| |||||||||||||||||| ||| || |||||||||||| ||||||||||||||||| |
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|
| T |
11273229 |
aatattttgctaataatgataaccaatgattattttttttcttcact-gatgtccaaccatagta |
11273292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 11131974 - 11132105
Alignment:
| Q |
129 |
tcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttat |
228 |
Q |
| |
|
||||||||||||||||| | | || ||||| | |||||||| ||||||||| ||| |||||| ||||||||||| |||||| ||||| ||| ||||| |
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|
| T |
11131974 |
tcaaacacacttgaaagtaagttcgtataatactcaaaatcatgttgttctacaatcacattgtcgtcaagccacagtaagaccgaatcaattgtgttat |
11132073 |
T |
|
| Q |
229 |
tgatgttttccttttcttttaaggaaagcttc |
260 |
Q |
| |
|
||| |||||| |||| ||| ||||||||| |
|
|
| T |
11132074 |
cgatcacttccttgtcttctaacgaaagcttc |
11132105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 11315976 - 11315900
Alignment:
| Q |
80 |
ttcttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctat |
156 |
Q |
| |
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|||||||| |||||| |||||||||||||| |||| | || |||| ||||||||||||||||| || ||||||| |
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|
| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
11315900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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