View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_low_42 (Length: 343)
Name: NF18003_low_42
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 1499449 - 1499769
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1499449 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaaatcactgcaatctcattttg |
1499548 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1499549 |
tggacctagtaatactcacctacacaaacttgttggacaagcaatatttggagatggagctgcggcagtcattgttggctctgacctagtacctgaaatt |
1499648 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacatata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499649 |
gagaaacctttatttgagttagtttggactgcacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacatata |
1499748 |
T |
|
| Q |
316 |
atattcataaggatgtctctg |
336 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
1499749 |
atattcgtaaggatgtctctg |
1499769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 1478208 - 1478504
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||| | |||| | |
|
|
| T |
1478208 |
caggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacattccg |
1478307 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| |||||||||||||| | ||| ||||||||||||||| ||||||||||||| ||||| ||| | |||||||| ||||||| | |||| |||||| |
|
|
| T |
1478308 |
tggtcctagtgatactcatttggacagtcttgttggacaagcactatttggagatggtgctgctgcactcattgttggttctgacccaataccagaaatt |
1478407 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| | || ||||| ||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
1478408 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggagccattgatggtcaccttcgtgaagctggtctaacat |
1478504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 1492377 - 1492673
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || |||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||| | |
|
|
| T |
1492377 |
caggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgtttgttctgaagtcactgcagtcacatttcg |
1492476 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| || |||||||| || | ||| ||||||||||||||| |||||||||||||||| || ||| |||||||||| ||||| | ||||| |||||| |
|
|
| T |
1492477 |
tggtcccagtgatacacacttggacagtcttgttggacaagcactatttggagatggagcagctgcacttattgttgggtctgatccggtaccagaaatt |
1492576 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|| |||||| |||||||| | ||||||| |||||||||||||| ||||||||||||| || ||| |||||| |||||||||| |||| |||||| |
|
|
| T |
1492577 |
gaaaaacctatatttgagatgatttggacagcacaaacaattgctcctgatagtgaaggtgccattgatggtcatcttcgtgaagctgggttaacat |
1492673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 1482402 - 1482698
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||| | |
|
|
| T |
1482402 |
caggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacattccg |
1482501 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| |||||||||||||| | ||| ||||||||||||||| | ||||||||||||||||| ||| | |||||||| ||||||| | |||| |||||| |
|
|
| T |
1482502 |
tggtcctagtgatactcatttggacagtcttgttggacaagcactctttggagatggagctgctgcactcattgttggttctgacccaataccagaaatt |
1482601 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| | || ||||| || || ||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
1482602 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggggccattgacggtcatcttcgtgaagctggtctaacat |
1482698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 1509333 - 1509629
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || |||| |||||| ||||| || ||||| |||||| ||| ||||||||||||||||||||||||| |||||| |||| || ||||||| |
|
|
| T |
1509333 |
caggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgtttgttctaaagtcattgcagtcacattttg |
1509432 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| ||| |||||||||| | ||| ||||||||||||||| ||||||||||||||||||| ||| | |||||||| |||||| ||||| |||||| |
|
|
| T |
1509433 |
tggccctggtgatactcatttggacagtcttgttggacaagcattatttggagatggagctgctgcactcattgttggtactgaccctgtaccagaaatt |
1509532 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||||| || |||||||| | ||||||||| |||||||||||||| | |||||||||| || ||| ||||| |||||||||||||| ||||||| |
|
|
| T |
1509533 |
gagaaatctatatttgagatggtttggactgcacaaacaattgctccaaatagtgaaggtgccattgacggtcaccttcgtgaagttggactaacat |
1509629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 1505186 - 1505482
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| || ||||| | |
|
|
| T |
1505186 |
caggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcg |
1505285 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
|| |||||||||||||| | ||| |||||||||||||| ||||||||||||||||||| ||| | |||||||| || || | | |||| |||||| |
|
|
| T |
1505286 |
cggccctagtgatactcacttggacagccttgttggacaagctctatttggagatggagctgctgcactaattgttggttcagatccaataccagaaatt |
1505385 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| ||||||| | ||||||||| |||||||||| || ||||||| |||||||| ||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
1505386 |
gagaaacctatatttgaaatggtttggactgcacaaacaatcgcgcctgatagcgaaggagccattgacggtcaccttcgtgaagctggactaacat |
1505482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 332
Target Start/End: Original strand, 1486896 - 1487195
Alignment:
| Q |
33 |
cgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctc-attttgtggacctagtgatact |
131 |
Q |
| |
|
|||| ||| |||||||| |||||||| || |||| ||||| ||||||||| | ||||||||||||||| || || | ||||||||| |||| ||| ||| |
|
|
| T |
1486896 |
cgttaggccaaggacttggctgagaacaataaagatgctcttgtgttggtaatatgttctgaagtcactaca-tcactattttgtggccctaatgaaact |
1486994 |
T |
|
| Q |
132 |
caactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatttg |
231 |
Q |
| |
|
| | ||| ||||||||||||||| ||||||| |||||||||| | ||| ||||||||||| || | || | |||||||||||||| | |||| |
|
|
| T |
1486995 |
gacatgagcaaccttgttggacaagcattatttggtgatggagctgttgtagtcattgttggctccgatccgatatcaaaaattgagaaacctctctttg |
1487094 |
T |
|
| Q |
232 |
agttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacatataatattcataaggatgt |
331 |
Q |
| |
|
|| | ||||||||| |||||||||| ||| |||||||||| ||| ||| | || ||||||||||||||||| ||||||| |||| ||| ||| ||||| |
|
|
| T |
1487095 |
agcttgtttggactgcacaaacaatagctctagatagtgaagaagcaattagcggccaacttcgtgaagttggactaacatttaatcttcgtaaagatgt |
1487194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 24163703 - 24163411
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
24163703 |
caggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgtttgttctgaagttaccgcaatcacattttg |
24163604 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
|||||| || |||||||| || |||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| | ||| |||||| |
|
|
| T |
24163603 |
tggaccaagcgatactcacttagacaaccttgttggacaagctctatttggagatggagctgctgcagtcattgttggctctgacccaatacaggaaatt |
24163504 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggcta |
308 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
24163503 |
gagaaacctctatttgagttagtttggacagcacaaacaatcgctccaaatagtgaaggagctatttgtggccaacttcgtgaatttgggcta |
24163411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5284517 - 5284813
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| | |
|
|
| T |
5284517 |
caggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcg |
5284616 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| ||||| |||||||| || ||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| | |||| |||||| |
|
|
| T |
5284617 |
tggccctagcgatactcacttagacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgacccaataccagaaatt |
5284716 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||| |||| |||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
5284717 |
gagagacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
5284813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5315320 - 5315616
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || || |||||||| || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| | |
|
|
| T |
5315320 |
caggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcg |
5315419 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| |||||||||||||| || ||| ||||||||||||||| |||||||||||||||| || || |||||||||||||||||| |||||| ||||| |
|
|
| T |
5315420 |
tggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccagaaata |
5315519 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
5315520 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
5315616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5302705 - 5303001
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| || || |||||||||| |||||||||||||||||||||||||| ||||| || ||||| || || ||||| | |
|
|
| T |
5302705 |
caggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgtatgttcagaggtcaccgctgtcacatttcg |
5302804 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||| |||||| |
|
|
| T |
5302805 |
tggccctagtgatactcacttggacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgaccccgtaccagaaatt |
5302904 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
5302905 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
5303001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5310606 - 5310902
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| | |
|
|
| T |
5310606 |
caggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcg |
5310705 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| || ||||||||||| | ||| |||||||| |||||| | ||||||||||||||||| || |||||||||| ||||||| |||||| |||||| |
|
|
| T |
5310706 |
tggccccagtgatactcacttggacagccttgttgggcaagcattgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaatt |
5310805 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
5310806 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
5310902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 5289610 - 5289314
Alignment:
| Q |
16 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttg |
115 |
Q |
| |
|
||||||| || || ||||||||||| || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||| | |
|
|
| T |
5289610 |
caggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacattccg |
5289511 |
T |
|
| Q |
116 |
tggacctagtgatactcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaatt |
215 |
Q |
| |
|
||| || ||||||||||| | ||| |||||||| |||||| | ||||||||||||||||| || |||||||||| ||||||| |||||| |||||| |
|
|
| T |
5289510 |
tggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaatt |
5289411 |
T |
|
| Q |
216 |
gagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||| | |||||||||||||| ||| ||| || |||||||||| ||| ||||||| |
|
|
| T |
5289410 |
gagaaacctatatttgagatggtttggactgcacaaacaattgctccggatagtgaaggagccattgatggccaccttcgtgaagctggactaacat |
5289314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 46706887 - 46706605
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || || || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| || |||| | || |||||||||| |
|
|
| T |
46706887 |
cttcgtttggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgtttgttctgaagtcactgcagtcacattccgcggccctagtgata |
46706788 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| | ||| |||||||| |||||| | ||||||| ||||||| ||| |||||||||| ||||| | |||||| ||||||||||||||| |||| |
|
|
| T |
46706787 |
ctcacttggacagccttgttgggcaagcactgtttggagtcagagctgctgcacttattgttggttctgatccagtaccagaaattgagaaacctatatt |
46706688 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||| | ||||||||| |||||||||||||| | |||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
46706687 |
tgagatggtttggacttcacaaacaattgctccagatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
46706605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 44128797 - 44129079
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || ||||| | || |||||||||| |
|
|
| T |
44128797 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgata |
44128896 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| | ||| ||||||||||| || ||||||||||||||||||| ||| | |||||||| || || | |||||| |||||||||||||| |||| |
|
|
| T |
44128897 |
ctcacttggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatt |
44128996 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||| | ||||||||| |||||||||||||| | |||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
44128997 |
tgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
44129079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 44133002 - 44133284
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || ||||| | || |||||||||| |
|
|
| T |
44133002 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgata |
44133101 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| | ||| ||||||||||| || ||||||||||||||||||| ||| | |||||||| || || | |||||| |||||||||||||| |||| |
|
|
| T |
44133102 |
ctcacttggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatt |
44133201 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||| | ||||||||| |||||||||||||| | |||||||||||||| ||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
44133202 |
tgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcaccttcgtgaagctggactaacat |
44133284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 44141424 - 44141706
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || ||||| | || |||||||||| |
|
|
| T |
44141424 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgata |
44141523 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| | ||| ||||||||||||||| ||||||||||||||||||| ||| | |||||||| || || | |||||| |||||||||||||| |||| |
|
|
| T |
44141524 |
ctcacttggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatt |
44141623 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
|||| | ||||||||| |||||||||||||| | ||||||||||| || ||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
44141624 |
tgagatggtttggactgcacaaacaattgctccagatagtgaaggggccattgacggtcaccttcgtgaagctggactaacat |
44141706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 37863289 - 37863019
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || || || ||||| || |||||||| |||||||| ||||| |||||||| || |||||||| | | || ||||||||||||||| |
|
|
| T |
37863289 |
cttcgtttggctaaagatttggctgaaaacaacaaaggcgctcgtgttttggtggtttgttcggagatcactgcagttactttccgtggacctagtgata |
37863190 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| || | | ||||| || || ||| | ||||||||||| || || || || |||||||| || || | | || ||| ||||||| ||||| || |
|
|
| T |
37863189 |
ctcatcttgatagtcttgtggggcaggcattgtttggagatggtgcagcagctgtgattgttggttcagatccgttgccagaagttgagaagcctttgtt |
37863090 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaag |
300 |
Q |
| |
|
||| || ||||||||| |||||||||| | | | |||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
37863089 |
tgaattggtttggactgcacaaacaatcgttccagatagtgaaggagctattgatggtcaccttcgagaag |
37863019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 37859263 - 37858981
Alignment:
| Q |
30 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcaatctcattttgtggacctagtgata |
129 |
Q |
| |
|
||||||||||| || ||||| ||||| || ||||||||||||||||||||||| |||||||| || | |||||| | | || ||||||| ||||| | |
|
|
| T |
37859263 |
cttcgtttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggtagtttgttcagagataactgcagttactttccgtggacccagtgaca |
37859164 |
T |
|
| Q |
130 |
ctcaactacacaaacttgttggacaagcaatatttggagatggagctgcggcagttattgttggctctgacctagtacctgaaattgagaaacctttatt |
229 |
Q |
| |
|
|||| || | | ||||| || |||||| | ||||||||||| || || || || || || || || |||| | |||| || |||||||||| || || |
|
|
| T |
37859163 |
ctcatcttgatagccttgtggggcaagcattgtttggagatggtgcagcagctgtgatcgtaggttcagacccattaccacaagttgagaaacccttgtt |
37859064 |
T |
|
| Q |
230 |
tgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgggctaacat |
312 |
Q |
| |
|
||| || || |||||| ||||||| || | | |||||||||||||| ||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
37859063 |
tgaattggtatggactgcacaaacgatccttccagatagtgaaggagcaattgacggtcaccttcgtgaagtcgggcttacat |
37858981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 35251216 - 35251323
Alignment:
| Q |
205 |
tacctgaaattgagaaacctttatttgagttagtttggactacacaaacaattgcttctgatagtgaaggagctatttgtggtcaacttcgtgaagttgg |
304 |
Q |
| |
|
||||||| |||||| |||||| |||||| ||| |||||| |||||||||| | |||||||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
35251216 |
tacctgaggttgagagacctttgtttgagctagagtggactgcacaaacaatccttcctgatagtcaaggagctattgatggtcaccttcgtgaggttgg |
35251315 |
T |
|
| Q |
305 |
gctaacat |
312 |
Q |
| |
|
||||||| |
|
|
| T |
35251316 |
actaacat |
35251323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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