View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_43 (Length: 342)

Name: NF18003_low_43
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_43
NF18003_low_43
[»] chr4 (8 HSPs)
chr4 (1-323)||(8979120-8979442)
chr4 (1-323)||(9000168-9000490)
chr4 (12-313)||(8966269-8966570)
chr4 (1-323)||(8954784-8955106)
chr4 (1-323)||(9030634-9030956)
chr4 (111-323)||(8900690-8900902)
chr4 (1-323)||(8929407-8929729)
chr4 (1-323)||(8914485-8914807)
[»] chr5 (2 HSPs)
chr5 (1-323)||(20074039-20074361)
chr5 (1-252)||(9400277-9400528)
[»] chr7 (2 HSPs)
chr7 (175-251)||(3619978-3620054)
chr7 (175-251)||(3630354-3630430)
[»] scaffold0287 (1 HSPs)
scaffold0287 (175-251)||(15655-15731)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8979442 - 8979120
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8979442 gaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctctttgaatagcccagacgtttacatacaatattgtttggg 8979343  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  8979342 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagtggagctggtaggtacaatcttaatgtctcttttatcactgc 8979243  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979242 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 8979143  T
Q  301 ttttttattagggcagtcatagc 323  Q
    |||||||||||||||||||||||    
T  8979142 ttttttattagggcagtcatagc 8979120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 9000168 - 9000490
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||   |||||| ||||| ||||||||||| || || |||||||||||||| | ||    
T  9000168 gaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctgaatagcccaagcattcacatacaatattgtcttgg 9000267  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    ||||||||||||| ||| | ||| ||||  |||| | |||||||||| | | ||| |  ||||||||||||| ||||||||  |||||||| ||||||||    
T  9000268 ctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagaggggctggtaggtgcaatcttagcgtctctttaatcactgc 9000367  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
    |||||||||  |  |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| ||||| |||||||||||||||    
T  9000368 cttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttctaatttcatcttgtactttcctcattactcttggg 9000467  T
Q  301 ttttttattagggcagtcatagc 323  Q
    ||||| |||| ||||||||||||    
T  9000468 tttttcattaaggcagtcatagc 9000490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 8966269 - 8966570
Alignment:
Q  12 gaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttgggctggaatattg 111  Q
    |||||||||||||||||| |||||||||||||||||  || | || ||||||||||||||||| || || ||||||| |||||| | ||||||||| |||    
T  8966269 gaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcccaagcattcacatacactattgtgttggctggaatcttg 8966368  T
Q  112 tagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgccttcaaatata 211  Q
    || ||| | ||||||||  |||| |||||||||||||| ||||| | |||||  ||||||| |||||| || |||||||||||||||||||| ||||||     
T  8966369 taaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggtgcaatctcaacgtctcttttatcactgcctttaaatatg 8966468  T
Q  212 gagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttgggttttttattag 311  Q
    |  ||||||||||||||| ||| ||||  || |||||||||| ||||||||| |||||||| ||||| |||||  |||||||||||||||||||||| ||    
T  8966469 ggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttcttcttgtactttcttcattactcttgggttttttatcag 8966568  T
Q  312 gg 313  Q
    ||    
T  8966569 gg 8966570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8955106 - 8954784
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    |||||||||| ||||||||| ||||||||||||||||| ||| ||||  |||  |||||||| ||||||||||| || |||||||| |||||||| |  |    
T  8955106 gaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctctctgaatagcccaagcatttacatataatattgtctttg 8955007  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    | ||||| ||||| ||| | ||  | ||  ||||  | ||||| ||||| ||||| | ||||||||||||||  ||||||| ||||||||| |  |  ||    
T  8955006 caggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagtggggctggtaggtgtaatcttagtgtctctttaactatagc 8954907  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
    |||||||||  || ||||||||||||||||||||| |||||||||||||||| ||||||| || || ||||| ||||  ||||| ||||||||||| |||    
T  8954906 cttcaaataaggacaattttgaatatcatcttcatataaaaaatcttttttaactcccaaatttcttatttcttcttttactttactcattactctaggg 8954807  T
Q  301 ttttttattagggcagtcatagc 323  Q
    ||||||||||| |||||||||||    
T  8954806 ttttttattagagcagtcatagc 8954784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 9030956 - 9030634
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    |||||||||| |||||| || ||||||||||||||||  |||| |||   |||| | ||||| ||||||||||| || || ||||||||||||||   ||    
T  9030956 gaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcctgg 9030857  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    ||||||||||||| ||||| ||| ||||  |||| | ||||||||| |  |  ||||||||||||||||| | ||||||||| |||||||| ||||||||    
T  9030856 ctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctttaatcactgc 9030757  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
     ||||||||  |  ||||||||| |||| ||||||||||| ||||||||  |||||||||||| || ||||| ||||| |||||   || ||||||||||    
T  9030756 attcaaataaggtaaattttgaagatcaccttcatctaaataatcttttgcacctcccaagtttctgatttcttcttgtactttatccaatactcttggg 9030657  T
Q  301 ttttttattagggcagtcatagc 323  Q
    ||||| |||||||| ||||||||    
T  9030656 tttttcattagggcggtcatagc 9030634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 323
Target Start/End: Original strand, 8900690 - 8900902
Alignment:
Q  111 gtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgccttcaaata- 209  Q
    ||||||| | ||||||||  ||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||     
T  8900690 gtagccacttataatgcacttttcccttgtttctcttggcacaagcaatgggcctggtaggtacaatctcaatgtctcttttatcactgccttcaagtag 8900789  T
Q  210 tagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttgggttttttatt 309  Q
     ||| ||||||| |||||||||||||||| ||| ||||||||| |||   | |||||||| || | |||||||||  ||||||||||||| |||||||||    
T  8900790 gaga-aattttgtatatcatcttcatctataaattcttttttaactcttgaattcctaatctcttgttgcactttcttcattactcttggattttttatt 8900888  T
Q  310 agggcagtcatagc 323  Q
    | ||||||||||||    
T  8900889 aaggcagtcatagc 8900902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 8929407 - 8929729
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    ||||| |||| ||||||||| |||||||| ||||| |||| ||||||  | | ||  ||||| ||||||| ||| || || ||||| | ||||||||  |    
T  8929407 gaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaatagaccaagcattcacatatactattgtttttg 8929506  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    | ||||||| |||||||   | ||||||  ||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||| ||    
T  8929507 caggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctggtaggtacaatctcaatgtctcttttatcaccgc 8929606  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
    ||||||||| |   ||||||| | ||||||| | |||| |||||| |||||| |||   |   |||||| || ||||| |||||  ||||||||||||||    
T  8929607 cttcaaatagacgaaattttgtagatcatctccgtctagaaaatcctttttaactcttgatcccctaatctcttcttgtactttcttcattactcttggg 8929706  T
Q  301 ttttttattagggcagtcatagc 323  Q
    |||||||||||||||||||||||    
T  8929707 ttttttattagggcagtcatagc 8929729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 8914485 - 8914807
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    ||||||||||  |||||||| ||||||||||||||||| ||||||||   ||| |  ||| | ||||||||||| || || ||| ||| ||| |  |  |    
T  8914485 gaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaatagcccaagcattcacaaacactatcgcctttg 8914584  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    | ||||| | | ||||||| ||| ||||| ||||  ||| |||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8914585 cgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggggctggcaggtacaatctcaatgtctcttttatcactgc 8914684  T
Q  201 cttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttggg 300  Q
    ||| || ||     ||||| | |||||||||||||||| ||| ||||||||| |||   | |||||||| || | ||| |||||  |||||||||||||     
T  8914685 ctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttttaactcttgaattcctaatctcttgttgtactttcttcattactcttgga 8914784  T
Q  301 ttttttattagggcagtcatagc 323  Q
    |||||||||| ||||||||||||    
T  8914785 ttttttattaaggcagtcatagc 8914807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 20074039 - 20074361
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||   |||||| ||| | ||||||||||| || || ||| ||| ||  |  |  |    
T  20074039 gaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgtatgaatagcccaagcattcacaaacactaccgcctttg 20074138  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    | ||||| | |||||||   ||| ||||  ||||||||| ||||||||| ||||||||||||||||| | ||||||||| | ||||||||||||||||||    
T  20074139 ccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatggggctggcaagtacaatctcagtgtctcttttatcactgc 20074238  T
Q  201 cttcaaata-tagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcctcttgcacttttctcattactcttgg 299  Q
    |||||| ||  ||| ||||||| |||||||||||||||| ||| ||||||||| ||    | || ||||| || | ||| |||||  |||||||||||||    
T  20074239 cttcaagtaggaga-aattttgtatatcatcttcatctataaattcttttttaacttttgaatttctaatctcttgttgtactttcttcattactcttgg 20074337  T
Q  300 gttttttattagggcagtcatagc 323  Q
     ||||||||||  |||||||||||    
T  20074338 attttttattaatgcagtcatagc 20074361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9400277 - 9400528
Alignment:
Q  1 gaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaatattgtttggg 100  Q
    |||||||||| ||||||||| |||||||| |||||||||| ||||||   |||||  ||||| ||||||||||| || || ||||||| |||||| |  |    
T  9400277 gaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcccaagcattcacatacactattgtctttg 9400376  T
Q  101 ctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctcttttatcactgc 200  Q
    ||||||| | ||| |||   ||| ||||  ||||| |||| || ||||| |  ||||||||   ||||||| | ||||| |||||||||||||| |||||    
T  9400377 ctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaatgtctcttttatgactgc 9400476  T
Q  201 cttcaaata-tagagaattttgaatatcatcttcatctaaaaaatctttttta 252  Q
    |||||| ||  ||| ||||||| |||||||||||||||||||| |||||||||    
T  9400477 cttcaagtaggaga-aattttgtatatcatcttcatctaaaaagtctttttta 9400528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 3619978 - 3620054
Alignment:
Q  175 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 251  Q
    ||||||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||  || ||||||||    
T  3619978 aatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactctttttt 3620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 3630354 - 3630430
Alignment:
Q  175 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 251  Q
    ||||||||||| ||||||||||| ||||| | ||||| |   ||||||||||||||||||||||  || ||||||||    
T  3630354 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttttt 3630430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 15731 - 15655
Alignment:
Q  175 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 251  Q
    ||||||||||| ||||||||||| ||||| | ||||| |   ||||||||||||||||||||||  || ||||||||    
T  15731 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttttt 15655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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