View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_48 (Length: 323)

Name: NF18003_low_48
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_48
NF18003_low_48
[»] chr4 (4 HSPs)
chr4 (18-316)||(12909456-12909754)
chr4 (18-84)||(13308786-13308852)
chr4 (120-173)||(41364991-41365044)
chr4 (135-169)||(1046645-1046679)
[»] chr6 (2 HSPs)
chr6 (193-256)||(2766858-2766921)
chr6 (138-170)||(21901328-21901360)
[»] chr7 (2 HSPs)
chr7 (134-172)||(34925280-34925318)
chr7 (136-172)||(8558812-8558848)
[»] chr3 (2 HSPs)
chr3 (194-256)||(51295674-51295736)
chr3 (193-235)||(54842202-54842244)
[»] chr8 (1 HSPs)
chr8 (138-166)||(33521053-33521081)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 12909456 - 12909754
Alignment:
Q  18 ttcttgtcactacttttggggtagcagtccatcaaccgttgagctcctgaaaatattgatcatataactgattttagattaaagccgtgttgccagtcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12909456 ttcttgtcactacttttggggtagcagtccatcaaccgttgagctcctgaaaatattgatcatataactgattttagattaaagccgtgttgccagtcat 12909555  T
Q  118 gaatcacagaaaaaaggcagtttgttcaaattctgctacgctacaatgttatagcgttgtaataccctctatatatgacaacaatttatactaaatagcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12909556 gaatcacagaaaaaaggcagtttgttcaaattctgctacgctacagtgttatagcgttgtaataccctctatatatgacaacaatttatactaaatagcg 12909655  T
Q  218 tgtcacataacaatagcgattggttcaaactctgctacgaaatagctgctatttgacaacattaaattgaagtcactgaatatcaggcgacagaataat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12909656 tgtcacataacaatagcgattggttcaaactctgctacgaaatagctgctattagacaacattaaattgaagtcactgaatatcaggcgacagaataat 12909754  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 13308852 - 13308786
Alignment:
Q  18 ttcttgtcactacttttggggtagcagtccatcaaccgttgagctcctgaaaatattgatcatataa 84  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  13308852 ttcttgtcactactcttggagtagcagtccatcaaccgttgagcttctgaaaatattgatcatataa 13308786  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 41365044 - 41364991
Alignment:
Q  120 atcacagaaaaaaggcagtttgttcaaattctgctacgctacaatgttatagcg 173  Q
    |||||| ||||| |||||||||||||||||||||||||| ||| || |||||||    
T  41365044 atcacaaaaaaatggcagtttgttcaaattctgctacgcaacagtgctatagcg 41364991  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 1046679 - 1046645
Alignment:
Q  135 cagtttgttcaaattctgctacgctacaatgttat 169  Q
    ||||||||||||||||||||||||| |||||||||    
T  1046679 cagtttgttcaaattctgctacgctgcaatgttat 1046645  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 2766921 - 2766858
Alignment:
Q  193 tgacaacaatttatactaaatagcgtgtcacataacaatagcgattggttcaaactctgctacg 256  Q
    |||||| | ||||||||||||| ||| |||||||||||||| |||| |||||||| ||||||||    
T  2766921 tgacaatattttatactaaataacgtatcacataacaatagagatttgttcaaaccctgctacg 2766858  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 21901360 - 21901328
Alignment:
Q  138 tttgttcaaattctgctacgctacaatgttata 170  Q
    |||||| ||||||||||||||||||||||||||    
T  21901360 tttgtttaaattctgctacgctacaatgttata 21901328  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 34925280 - 34925318
Alignment:
Q  134 gcagtttgttcaaattctgctacgctacaatgttatagc 172  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  34925280 gcagtttgttcaaattctgctatgctacaatgctatagc 34925318  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 8558812 - 8558848
Alignment:
Q  136 agtttgttcaaattctgctacgctacaatgttatagc 172  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  8558812 agtttgttcaaattccgctatgctacaatgttatagc 8558848  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 51295736 - 51295674
Alignment:
Q  194 gacaacaatttatactaaatagcgtgtcacataacaatagcgattggttcaaactctgctacg 256  Q
    ||||||| ||| ||||||||||||| ||||  ||||||| ||||| | |||||||||||||||    
T  51295736 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacg 51295674  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 54842202 - 54842244
Alignment:
Q  193 tgacaacaatttatactaaatagcgtgtcacataacaatagcg 235  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||    
T  54842202 tgacaacattttatactaaatagcgtatcacagaacaatagcg 54842244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 33521081 - 33521053
Alignment:
Q  138 tttgttcaaattctgctacgctacaatgt 166  Q
    |||||||||||||||||||||||||||||    
T  33521081 tttgttcaaattctgctacgctacaatgt 33521053  T

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