View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_49 (Length: 317)

Name: NF18003_low_49
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_49
NF18003_low_49
[»] chr4 (7 HSPs)
chr4 (60-301)||(31164419-31164648)
chr4 (15-57)||(31163087-31163129)
chr4 (194-268)||(55770338-55770412)
chr4 (194-268)||(55834594-55834668)
chr4 (173-268)||(27453097-27453192)
chr4 (90-119)||(33225947-33225976)
chr4 (195-256)||(35672417-35672478)
[»] chr5 (2 HSPs)
chr5 (173-295)||(11069296-11069418)
chr5 (173-295)||(2078471-2078593)
[»] chr6 (2 HSPs)
chr6 (173-268)||(2544861-2544956)
chr6 (173-268)||(6079644-6079739)
[»] chr1 (4 HSPs)
chr1 (176-295)||(49350407-49350526)
chr1 (240-295)||(19821962-19822017)
chr1 (205-268)||(52921048-52921111)
chr1 (234-295)||(15424503-15424564)
[»] chr3 (3 HSPs)
chr3 (175-268)||(52136384-52136477)
chr3 (205-295)||(51450729-51450819)
chr3 (231-295)||(7023189-7023253)
[»] scaffold0001 (1 HSPs)
scaffold0001 (214-294)||(440127-440207)
[»] chr2 (5 HSPs)
chr2 (173-268)||(16290812-16290907)
chr2 (173-300)||(30335714-30335841)
chr2 (205-295)||(45329604-45329694)
chr2 (228-268)||(3978560-3978600)
chr2 (215-295)||(8561043-8561123)
[»] scaffold0279 (1 HSPs)
scaffold0279 (175-279)||(18441-18545)
[»] scaffold0024 (1 HSPs)
scaffold0024 (203-266)||(48220-48283)
[»] chr8 (2 HSPs)
chr8 (231-293)||(3801877-3801939)
chr8 (90-118)||(24399903-24399931)
[»] chr7 (2 HSPs)
chr7 (77-119)||(28359397-28359439)
chr7 (90-119)||(44401239-44401268)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 31164419 - 31164648
Alignment:
Q  60 atatatttatcaaacacattaatctttatatcttaatagtttctcttataatttttctagtgattagtcattctatccgaacatcaatgcattgaccttt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  31164419 atatatttatcaaacacattaatctttatatcttaatagctt------------ttctagtgattagtcattctatccgaacatcaatgcattgaccttt 31164506  T
Q  160 actcattcgataatgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttga 259  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  31164507 actcattcgataatgtgctcgagctataaaacgtgttgctttcgagcaacaacttaacattcacactattgcgtatttgatccatgtcatagagatttga 31164606  T
Q  260 caaagttttgcattggttgttgaaacctaacacaacattatt 301  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  31164607 caaagttttgcattggttgtcgaaacctaacacaacattatt 31164648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 31163087 - 31163129
Alignment:
Q  15 atatgttggtttgaaagacacttgcaagttgtaatattatgca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31163087 atatgttggtttgaaagacacttgcaagttgtaatattatgca 31163129  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 55770338 - 55770412
Alignment:
Q  194 gttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    |||||||| | ||||| || |||||||||||||| | |||||||||||| | ||||||||||| |||||||||||    
T  55770338 gttgctttcgggcaacgacctagcattcacactattccgtatttgatccttgtcatagagattggacaaagtttt 55770412  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 55834594 - 55834668
Alignment:
Q  194 gttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    |||||||| | ||||| || |||||||||||||| | |||||||||||| | ||||||||||| |||||||||||    
T  55834594 gttgctttcgggcaacgacctagcattcacactattccgtatttgatccttgtcatagagattggacaaagtttt 55834668  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 27453097 - 27453192
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||||||||| | |||||||||| |  ||||| || || ||||||||||| |  ||||||| ||||| ||||||||||| | |||||||||    
T  27453097 tgtactcgagctatacagcgtgttgcttctaggcaacgacctaacattcacactattttgtatttggtccatgtcatagagattcggcaaagtttt 27453192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 33225947 - 33225976
Alignment:
Q  90 tcttaatagtttctcttataatttttctag 119  Q
    ||||||||||||||||||||||||||||||    
T  33225947 tcttaatagtttctcttataatttttctag 33225976  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 35672417 - 35672478
Alignment:
Q  195 ttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatt 256  Q
    ||||||||||||| |||| |||| ||||||||| | | |||| ||||||| |||||||||||    
T  35672417 ttgcttttgagcagcaacctagctttcacactattacatattcgatccatctcatagagatt 35672478  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 11069296 - 11069418
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcat 272  Q
    ||||||||||||||| | ||||||||||    ||||| || |||||||||||||| |  ||||||| ||||| ||||||||||| ||||||||||||| |    
T  11069296 tgtactcgagctatacagcgtgttgcttccaggcaacgacctagcattcacactattttgtatttggtccatgtcatagagattcgacaaagttttgcgt 11069395  T
Q  273 tggttgttgaaacctaacacaac 295  Q
    ||||||||||  |||||||||||    
T  11069396 tggttgttgaggcctaacacaac 11069418  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 2078471 - 2078593
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcat 272  Q
    ||||||||||| ||| |||| |||||||  | ||||| || |||||||||| ||| |  | ||||| ||||| ||||||||||| ||||||||||| | |    
T  2078471 tgtactcgagccatacaacgcgttgcttccgggcaacgacctagcattcacgctattttgcatttggtccatgtcatagagattcgacaaagttttactt 2078570  T
Q  273 tggttgttgaaacctaacacaac 295  Q
    ||| ||| ||  |||||||||||    
T  2078571 tggctgtcgaggcctaacacaac 2078593  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 2544861 - 2544956
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||||||||| || ||||||||| || ||||||||||  ||||||||||| | |||| ||||||||| ||||||| |||  ||||||||||    
T  2544861 tgtactcgagctatacaatgtgttgcttctgggcaacaacttgacattcacactacttcgtacttgatccatgtcatagaaattccacaaagtttt 2544956  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 6079739 - 6079644
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||||| ||| |||| |||||||  | ||||| || |||||||||||||| | ||||| || ||||| ||||||||||| |||||||||||    
T  6079739 tgtactcgagccatacaacgagttgcttccgggcaacgacctagcattcacactatttcgtatgtggtccatgtcatagagattcgacaaagtttt 6079644  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 49350407 - 49350526
Alignment:
Q  176 actcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattgg 275  Q
    |||||||| ||| | || ||||||| || ||||| || |||||||||||||| | |||||||| ||||| ||||||||||| ||||||||||| | ||||    
T  49350407 actcgagccatacagcgcgttgcttctgggcaacgacctagcattcacactatttcgtatttggtccatgtcatagagattcgacaaagttttacgttgg 49350506  T
Q  276 ttgttgaaacctaacacaac 295  Q
     ||| ||  |||||||||||    
T  49350507 ctgtcgaggcctaacacaac 49350526  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 19822017 - 19821962
Alignment:
Q  240 tccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||| ||||||||||  |||||| |||||||||||||||||| ||||||||||||    
T  19822017 tccatgtcatagagatacgacaaaattttgcattggttgttgagacctaacacaac 19821962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 52921111 - 52921048
Alignment:
Q  205 gcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||| || |||||||||||||| | |||||||| ||||| ||||||||||| |||||||||||    
T  52921111 gcaacgacctagcattcacactatttcgtatttggtccatgtcatagagattcgacaaagtttt 52921048  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 15424503 - 15424564
Alignment:
Q  234 atttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||||||||| | ||||||||||||||||||||| | |||||||| |   |||||||||||    
T  15424503 atttgatccatgttatagagatttgacaaagttttacgttggttgtcgtggcctaacacaac 15424564  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 52136477 - 52136384
Alignment:
Q  175 tactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||| ||| ||||||||||||  | ||||| || |||||||||||||| | |||||||| || || ||||||||||| |||||||||||    
T  52136477 tactcgagccatacaacgtgttgcttccgggcaacgacctagcattcacactatttcgtatttggtctatgtcatagagattcgacaaagtttt 52136384  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 51450729 - 51450819
Alignment:
Q  205 gcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||| || |||||||||||||| | |||||||| |||||  |||||| ||| ||||||||||| | |||| ||| ||  |||||||||||    
T  51450729 gcaacgacctagcattcacactatttcgtatttggtccatgccatagatattcgacaaagttttacgttggctgtcgaggcctaacacaac 51450819  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 7023253 - 7023189
Alignment:
Q  231 cgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||| || ||||| |||||||||||||| |||||||| | |||| ||||||  |||||||||||    
T  7023253 cgtatctggtccatgtcatagagatttgataaagttttacgttggctgttgaggcctaacacaac 7023189  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 440207 - 440127
Alignment:
Q  214 tagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaa 294  Q
    |||||||||||||| | |||||||| ||||| ||||||||||||||||||||||| | |||| ||| ||  ||||||||||    
T  440207 tagcattcacactatttcgtatttggtccatgtcatagagatttgacaaagttttacgttggctgtcgaggcctaacacaa 440127  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 16290907 - 16290812
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||||  ||| || |||||||||  | ||||| || |||||||||||||| | |||||||| ||||| ||||||||||| |||||||||||    
T  16290907 tgtactcgagtcatacaaggtgttgcttccgggcaacgacctagcattcacactatttcgtatttggtccatgtcatagagattcgacaaagtttt 16290812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 30335841 - 30335714
Alignment:
Q  173 tgtactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcat 272  Q
    ||||||||||||||| || ||||||||| || ||||| |  |||||||||| | | ||| |||||  ||||||||||| ||||| | ||||  ||| |||    
T  30335841 tgtactcgagctatacaatgtgttgcttatgggcaaccatctagcattcacgcaattgcatatttagtccatatcataaagattcgccaaaaatttacat 30335742  T
Q  273 tggttgttgaaacctaacacaacattat 300  Q
    ||||||| ||  | ||||||||| ||||    
T  30335741 tggttgtcgaggcataacacaaccttat 30335714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 45329604 - 45329694
Alignment:
Q  205 gcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||| || |||||||||||||| |  ||||||||||  | ||||||||||| || |||||||| | |||| ||| || ||||||||||||    
T  45329604 gcaacgacctagcattcacactattcagtatttgatctttgtcatagagattcgataaagttttacgttggctgtcgagacctaacacaac 45329694  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 3978560 - 3978600
Alignment:
Q  228 atgcgtatttgatccatatcatagagatttgacaaagtttt 268  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  3978560 atgcgtatttggtccatgtcatagagattcgacaaagtttt 3978600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 8561043 - 8561123
Alignment:
Q  215 agcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacacaac 295  Q
    ||||||||||||| | |||||||| ||||| |||||| ||||  |||||||||| | |||| ||| ||  |||||||||||    
T  8561043 agcattcacactatttcgtatttggtccatgtcatagggattcaacaaagttttacgttggctgtcgaggcctaacacaac 8561123  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 18545 - 18441
Alignment:
Q  175 tactcgagctataaaacgtgttgcttttgagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagttttgcattg 274  Q
    |||| |||||||| | || |||||||  | ||||| || ||||| |||||||| | |||||||| ||||| ||||||||||| ||||||||||| | |||    
T  18545 tacttgagctatacagcgcgttgcttccgggcaacgacctagcaatcacactatttcgtatttggtccatgtcatagagattcgacaaagttttacgttg 18446  T
Q  275 gttgt 279  Q
    |||||    
T  18445 gttgt 18441  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 48220 - 48283
Alignment:
Q  203 gagcaacaacttagcattcacactaatgcgtatttgatccatatcatagagatttgacaaagtt 266  Q
    ||||||| || |||||||||||||| | |||||||||||||| ||||||||||| || ||||||    
T  48220 gagcaacgacctagcattcacactatttcgtatttgatccatgtcatagagattcgataaagtt 48283  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 3801939 - 3801877
Alignment:
Q  231 cgtatttgatccatatcatagagatttgacaaagttttgcattggttgttgaaacctaacaca 293  Q
    |||| ||||| |||||||||||||||  |||||||||| | |||||||| || ||||||||||    
T  3801939 cgtaattgattcatatcatagagattcaacaaagttttacgttggttgtcgagacctaacaca 3801877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 24399903 - 24399931
Alignment:
Q  90 tcttaatagtttctcttataatttttcta 118  Q
    |||||||||||||||||||||||||||||    
T  24399903 tcttaatagtttctcttataatttttcta 24399931  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 28359439 - 28359397
Alignment:
Q  77 attaatctttatatcttaatagtttctcttataatttttctag 119  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  28359439 attaatctctagatcttaatattttctcttataatttttctag 28359397  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 44401239 - 44401268
Alignment:
Q  90 tcttaatagtttctcttataatttttctag 119  Q
    ||||||||||||||||||||||||||||||    
T  44401239 tcttaatagtttctcttataatttttctag 44401268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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