View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_5 (Length: 577)
Name: NF18003_low_5
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 40308238 - 40307698
Alignment:
| Q |
18 |
atgaaacatgagagtgatgatgactgttgtattgaatttcagtaatatgaggtttacatgtaaagagatacttcaaagttattgttctggaaataacact |
117 |
Q |
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| T |
40308238 |
atgaaacatgagagtgatgatgactgttgtattgaatttcagtaatatgaggtttacatgcaaagagatacttcaaagttattgttctggaaataacact |
40308139 |
T |
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| Q |
118 |
tgcattattataattatattgttgttaattatacgaagactaatagtggtcttcattatttgatcaaatcgtgctaggactagttccacctgagatctaa |
217 |
Q |
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| T |
40308138 |
tgcattattataat-atattgttgttaattatacgaagactaatagcagtcttcattatttgatcaaatcgtgctaggactagttccacctgagatctaa |
40308040 |
T |
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| Q |
218 |
tctttcctccaannnnnnnnnnnnnnnnnnnnnnagtagaaagattgaaagaaggcaaatcaaaatccacaagtatccatgtttaacccaaatacttcat |
317 |
Q |
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| T |
40308039 |
tctttcctccaatttttggctttttaatttttttagtagaaagattgaaagaaggcaaatcaaaatccacaagtatccatgtttaacccaaatacttcat |
40307940 |
T |
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| Q |
318 |
gtgtaaaaatatagattattgagaatggtgatatcgaagaactacatgagttaggatctggaacctttggaaccgtgtatcatggcaaatggaggggaac |
417 |
Q |
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| T |
40307939 |
gtgtaaaaatatagattattgagaatggtgatatcgaagaactacatgagttaggatctggaacctttggaaccgtgtatcatggcaaatggaggggaac |
40307840 |
T |
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| Q |
418 |
agatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatctattgagtataaagtataaacaaa |
517 |
Q |
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| T |
40307839 |
agatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatccattgagtataaagtataaacaaa |
40307740 |
T |
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| Q |
518 |
ttgaatttattagtgttgtttatttagtttttctttcaaact |
559 |
Q |
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| T |
40307739 |
ttgactttattagtgttgtttatttagtttttctttcaaact |
40307698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 459
Target Start/End: Original strand, 48271225 - 48271310
Alignment:
| Q |
374 |
tctggaacctttggaaccgtgtatcatggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttgttttgctgg |
459 |
Q |
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| T |
48271225 |
tctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactgatagatgttttgctgg |
48271310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 16018572 - 16018653
Alignment:
| Q |
369 |
taggatctggaacctttggaaccgtgtatcatggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttg |
450 |
Q |
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| T |
16018572 |
taggttctggtacatttgggactgtgtatcatggaaaatggagaggaacagatgttgctatcaaaagaataaagaagagttg |
16018653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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