View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_52 (Length: 302)
Name: NF18003_low_52
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 15684822 - 15684549
Alignment:
| Q |
1 |
gtgcagcagtggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtcttatttgtgtttatt |
100 |
Q |
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| T |
15684822 |
gtgcagcagtggagaataattagcttgacaaagtctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtcttatttgtgtttatt |
15684723 |
T |
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| Q |
101 |
atgctttctttcattttggtactttactctaatgattatacaagtttattaaacttgtttgtatttccttaattcctttaaagtggatataaacttggat |
200 |
Q |
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| T |
15684722 |
atgctttccttcattttgg-----tactctaatgattatacaagtttattaaacttgtatgtatttccttgattcctttaaagtggatataaacttggat |
15684628 |
T |
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| Q |
201 |
tgctttataaattttgccgcggta-nnnnnnnnataaccacactttgatgtgtgagtatatattggctcaacctaacat |
278 |
Q |
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| T |
15684627 |
tgctttataaattttgccgcggtatttttttttataacgacactttgatgtgtgagtatatattggctcaacctaacat |
15684549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 15619988 - 15619772
Alignment:
| Q |
3 |
gcagcagtggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtcttatttgtgttt-atta |
101 |
Q |
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| T |
15619988 |
gcagcggtgaagaataattaggttgacaaagtctcttgaacttcaaattattttatgatattgtcaaactattgtgtgtcgttttttttttgttttatta |
15619889 |
T |
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| Q |
102 |
tgctttctttcattttggtactttactctaatgattatacaagtttattaaacttgtttgtatttccttaattcctttaaagtggatat-aaacttggat |
200 |
Q |
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| T |
15619888 |
tactttccttcattttggtactttactataatgattatacaagtttattaaacttgtatgtatttccttaatccctttaaagtggatataaaacttggat |
15619789 |
T |
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| Q |
201 |
tgctttataaattttgc |
217 |
Q |
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| T |
15619788 |
tgctttataaattttgc |
15619772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 19017289 - 19017360
Alignment:
| Q |
10 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgt |
81 |
Q |
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| T |
19017289 |
tggagaataattagcttgacaaaagctcttgaacctcaaactatttcatgatgttttcaaactattgtgtgt |
19017360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 17273987 - 17273933
Alignment:
| Q |
10 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
64 |
Q |
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| T |
17273987 |
tggagaataattagcttgacaaaatctttcaaaccttaatctattttatgatatt |
17273933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 17290150 - 17290096
Alignment:
| Q |
10 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
64 |
Q |
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||||||||||||||||||||||||||| | ||||| || |||||||||||||| |
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| T |
17290150 |
tggagaataattagcttgacaaaatctttcaaaccttaatctattttatgatatt |
17290096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 18652447 - 18652393
Alignment:
| Q |
10 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
64 |
Q |
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||||||||||||||||| |||||| || |||||||| || |||||||||||||| |
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| T |
18652447 |
tggagaataattagctttacaaaagcttttgaaccttaatctattttatgatatt |
18652393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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