View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_58 (Length: 285)
Name: NF18003_low_58
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_58 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 8939633 - 8939349
Alignment:
| Q |
1 |
taatatgtataatgaggtaaaaatgacaatacttgcgtttgattaccgtattttgcagggttttaaactaactgcgataatgaagtgtaaatatcaaggt |
100 |
Q |
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| T |
8939633 |
taatatgtataatgaggtaaaaatgacaatacttgcttttgattaccgtattttgcagggttttgaactaactgcgataatgaagtgtaaatatcaaggt |
8939534 |
T |
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| Q |
101 |
agacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggttttcaaaatctgaaca |
200 |
Q |
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| T |
8939533 |
agacaagcttagcttctggaaatttattttcaaaggcatccattttagatactaatttggagttgaagagtcttgctgcttggttttcaaaatctgaaca |
8939434 |
T |
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| Q |
201 |
tcctctttcaatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagct |
285 |
Q |
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| T |
8939433 |
tcctctttcaatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagct |
8939349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 86 - 285
Target Start/End: Complemental strand, 8947081 - 8946882
Alignment:
| Q |
86 |
tgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggtt |
185 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||| ||| |
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| T |
8947081 |
tgtaaatatcaaggtagacaagcttagcctctggaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgtt |
8946982 |
T |
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| Q |
186 |
ttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagct |
285 |
Q |
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| T |
8946981 |
ttctaaacctgaacagtgtctatacattcctcctccaattgttctctgtgagggaacacaccctatatatggcatgccaattactccaattcttctagct |
8946882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 31796055 - 31796127
Alignment:
| Q |
210 |
aatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttcta |
282 |
Q |
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| T |
31796055 |
aatgcctccaccaagtgttctttgtgagggcacacaccctataactggtacatcaaatactccaatccttcta |
31796127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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