View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_59 (Length: 284)
Name: NF18003_low_59
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 43 - 266
Target Start/End: Complemental strand, 35496231 - 35496014
Alignment:
| Q |
43 |
ttattgagtagaatttatatggacaccacaacttgaaaataaatcctacttaaaattgtacccacatgaatgtcactctctcnnnnnnnggtacaaaatt |
142 |
Q |
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| T |
35496231 |
ttattgagtagaatttatatggacaccacaacttaaaaataaatcctacgtaaaattgtatccacatgaatgtcactctcttttttattggtacaaaatt |
35496132 |
T |
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| Q |
143 |
tcactctacaagacagtgaatgttaagagagcactagataaagtagtgtttattgcatttctttactaattaaaacaaaaattcttaaacaatgggatac |
242 |
Q |
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| T |
35496131 |
tcactctaca------tgaatgttaaaagagcactaaataaagtagtgtttatagcatttctttactaattcaaacaaaaattcttaaacaatgggatac |
35496038 |
T |
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| Q |
243 |
cttggcccttaatcggggcgggtt |
266 |
Q |
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|||||||||||||||||||||||| |
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| T |
35496037 |
cttggcccttaatcggggcgggtt |
35496014 |
T |
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