View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_low_64 (Length: 264)
Name: NF18003_low_64
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 8763257 - 8763024
Alignment:
| Q |
14 |
aaggagagaaagatattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763257 |
aaggagagaaagatattcaagttgttaagaaacaaaaacttgtttggacaccttatctccacaaaatgtttctgcttgctgttaaccaaattggattgga |
8763158 |
T |
|
| Q |
114 |
aagtaagtcatcttttaaaaatatttttcttatgaaaggctttttaattctaatcagttttacaatgtgtttttcttgtgtttatattttccctaattca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763157 |
aagtaagtcatcttttaaaaatatttttcttatgaaaggctttttaaatctaattagttttacaatgtgtttttcttgtgtttatattttccctaattca |
8763058 |
T |
|
| Q |
214 |
gaggctgttccaaagaaaattctggagatcatga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8763057 |
gaggctgttccaaagaaaattctggagatcatga |
8763024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 8789577 - 8789503
Alignment:
| Q |
173 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789577 |
ttacaatgtgtttttcttgtgtttatattttccctaattcagaggctgttccaaagaaaattctggagatcatga |
8789503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University