View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_7 (Length: 534)
Name: NF18003_low_7
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 166 - 480
Target Start/End: Original strand, 28615072 - 28615375
Alignment:
| Q |
166 |
tatgagggtttcatattagatttagatacgatcatgaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
265 |
Q |
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| T |
28615072 |
tatgagggtttcatattagatttagatatgat---gaccggataatgtgttatatgtgagagttatccctcaccttatcaataggttttatagtttgaaa |
28615168 |
T |
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| Q |
266 |
ctcaagttatgctatagatatcctaagtctgatgtatgatgtaacgattgagaatctcgaatttgataagatatatctgacctaaaaattacatacctta |
365 |
Q |
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| T |
28615169 |
ctcaagttatgctatagatatcctaagtctgatgta-------acgattgagaatctcgaatttgataagatatatctgacctgaaaattacatacccta |
28615261 |
T |
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| Q |
366 |
aattttgagagcgattttaatgcatcacttattttaccattaaatttagttactaaactttattgttttctcttggtagtgagaaaaatatttgtgtgca |
465 |
Q |
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| T |
28615262 |
aattttgagagcgattt-aatgcatcacttattttaccattaaatttagtttctaaactttattgttttctcttggtagtgagaaaaatatttgtgtgca |
28615360 |
T |
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| Q |
466 |
tttatttaatcactt |
480 |
Q |
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| T |
28615361 |
tttatttaatcactt |
28615375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 28614860 - 28615017
Alignment:
| Q |
1 |
aactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagct |
100 |
Q |
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| T |
28614860 |
aactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagct |
28614959 |
T |
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| Q |
101 |
gtaagtaacgtacataagacctaccaaatttttacaaatttttatgcgacaatatttg |
158 |
Q |
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| T |
28614960 |
gtaagtaacttacataagacctaccaaatttttacaaatttttatgctacaatatttg |
28615017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28629385 - 28629493
Alignment:
| Q |
1 |
aactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
28629385 |
aactgattggatgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctcatgaagct |
28629484 |
T |
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| Q |
101 |
gtaagtaac |
109 |
Q |
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| T |
28629485 |
gtaagtaac |
28629493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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