View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_71 (Length: 247)
Name: NF18003_low_71
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36512293 - 36512058
Alignment:
| Q |
1 |
ctatttcaattttgtttttaatttcactctcattcattcattcttggacaacgcaggtgtacgatgctatcgcccgtccaccaagatcccatttaatttt |
100 |
Q |
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| T |
36512293 |
ctatttcaattttgtttttaatttcactctcattcattcattcttggacaacgcaggtgtacgatgctatcgcccgtccaccaagatcccatttaatttt |
36512194 |
T |
|
| Q |
101 |
agtg---ggcggtgtcacaccccatgtcatttcctatgatgatcctattctccaaggatactccaagcttgcattggactattaccgtgnnnnnnncaat |
197 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36512193 |
aatgggcggcggtgtcacaccccatgtcatttcctatgatgatcctattctccaaggatactccaagcttgcattggactattaccgtgaaaaaaacaat |
36512094 |
T |
|
| Q |
198 |
aatcaggtaagagaatgaatattgtatgttgtttat |
233 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36512093 |
aatcaggtaagagaatgaatattgtatgttgtttat |
36512058 |
T |
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