View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_73 (Length: 245)
Name: NF18003_low_73
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_73 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 20522 - 20740
Alignment:
| Q |
12 |
catcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcctcttcgacgatccactactaccctcgtcttcactctcatactc |
111 |
Q |
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| T |
20522 |
catcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcctcttcgacgctccactactaccctcgtcttcactctcatactc |
20621 |
T |
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| Q |
112 |
ttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaattcccattcttattacttttttcataatcattatcagattttcct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
20622 |
ttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaattcccactcttattacttttttcataatcattatcaaattttcct |
20721 |
T |
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| Q |
212 |
aacagagacacaaattttt |
230 |
Q |
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|||| |||||||||||||| |
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| T |
20722 |
aacacagacacaaattttt |
20740 |
T |
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