View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_76 (Length: 233)
Name: NF18003_low_76
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13484226 - 13484011
Alignment:
| Q |
1 |
actgctttggttttcctctctctgttctgtacatgagatgacacactgttgcaatgagatatcgatattaatcggtgccaaaatagcacgtatgaatcaa |
100 |
Q |
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| T |
13484226 |
actgctttgcttttcctctctctgttctgtacatgagatgacacactgttgcaatgagatatcgatattaatcggtgccaaaatagcacgtatgaatcaa |
13484127 |
T |
|
| Q |
101 |
gggctcattctccaacactataaagctagtataaattaaatttgcannnnnnnnnnnnnnnnngcttcaaaaaacgaaccctaagctttatatttataga |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13484126 |
gggctcattctccaacactataaaactagtataaattaaatttgcatttttctttttctttttgcttcaaaaaacgaaccctaagctttatatttataga |
13484027 |
T |
|
| Q |
201 |
tgccatacatatactg |
216 |
Q |
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|||||||||||||||| |
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| T |
13484026 |
tgccatacatatactg |
13484011 |
T |
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