View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_low_8 (Length: 532)

Name: NF18003_low_8
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_low_8
NF18003_low_8
[»] chr7 (10 HSPs)
chr7 (8-253)||(37126982-37127226)
chr7 (441-524)||(37127572-37127655)
chr7 (308-390)||(37127281-37127363)
chr7 (449-506)||(37127459-37127516)
chr7 (444-506)||(37127300-37127362)
chr7 (123-209)||(47535394-47535480)
chr7 (332-390)||(37127459-37127517)
chr7 (458-497)||(28756064-28756103)
chr7 (327-385)||(37127575-37127633)
chr7 (465-524)||(47535196-47535255)
[»] chr1 (3 HSPs)
chr1 (135-252)||(42138628-42138745)
chr1 (465-524)||(42138842-42138901)
chr1 (444-499)||(13658474-13658529)
[»] chr8 (4 HSPs)
chr8 (457-525)||(21519138-21519206)
chr8 (123-167)||(35890935-35890979)
chr8 (465-524)||(21519335-21519394)
chr8 (136-178)||(21519559-21519601)
[»] chr5 (5 HSPs)
chr5 (144-242)||(36560715-36560813)
chr5 (123-216)||(32151205-32151298)
chr5 (459-524)||(34731615-34731680)
chr5 (444-524)||(9991717-9991797)
chr5 (156-198)||(9991929-9991971)
[»] chr2 (4 HSPs)
chr2 (462-524)||(24489094-24489156)
chr2 (144-198)||(24489513-24489567)
chr2 (123-211)||(42834623-42834711)
chr2 (462-524)||(32983671-32983733)
[»] chr3 (2 HSPs)
chr3 (26-100)||(41989901-41989975)
chr3 (147-243)||(36432611-36432707)
[»] chr6 (1 HSPs)
chr6 (462-524)||(33582567-33582629)
[»] scaffold0006 (1 HSPs)
scaffold0006 (444-499)||(148235-148290)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 37126982 - 37127226
Alignment:
Q  8 gtagcaaaggaaatatcgaggcttcatcattatgctaacctcttagaggataattcaaagttatcttgtcaagaactgagacatctctattcaatggcgg 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37126982 gtagcaaaggaaatattgaggcttcatcattatgctaacctcttagag-ataattcaaagttatcttgtcaagaactgagacatctctattcaatggcgg 37127080  T
Q  108 atcttgacnnnnnnncttgggggtgcgaaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatt 207  Q
    ||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37127081 atcttgactttttttcttggggttgcgaaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtggtctgatt 37127180  T
Q  208 tgctgtaaacatatgtcgttggtgcaggtttgagtcaccatgggac 253  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  37127181 tgctgtaaacatgtgtcgttggtgcaggtttgagtccccatgggac 37127226  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 37127572 - 37127655
Alignment:
Q  441 cgaaccttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37127572 cgaaccttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatatataggcataatactatatatat 37127655  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 37127281 - 37127363
Alignment:
Q  308 gcgaagggtcgaacacgcgaccttcagcatgttgaggcaccatctttccaatgcaaccaccaaaaatttattgaatatgtagc 390  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||||| ||||||||||||||||||||||    
T  37127281 gcgaagggtcgaacacgcgaccttcagcatgttgaggcaccccctttctactgcaaccactaaaaatttattgaatatgtagc 37127363  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 37127459 - 37127516
Alignment:
Q  449 cagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatatgtag 506  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37127459 cagcatgttgaggcaccccctttccactgcaaccactaagaatttattgaatatgtag 37127516  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 37127300 - 37127362
Alignment:
Q  444 accttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatatgtag 506  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  37127300 accttcagcatgttgaggcaccccctttctactgcaaccactaaaaatttattgaatatgtag 37127362  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 47535480 - 47535394
Alignment:
Q  123 cttgggggtgcgaaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttg 209  Q
    ||||||||| |  ||||||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| |||| || |||||||    
T  47535480 cttgggggtaccgaactattatggaatatatattaaaatgattcaaataatagcaaaataagttaagtgctttggtggtttgatttg 47535394  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 37127459 - 37127517
Alignment:
Q  332 cagcatgttgaggcaccatctttccaatgcaaccaccaaaaatttattgaatatgtagc 390  Q
    |||||||||||||||||  ||||||| ||||||||| || |||||||||||||||||||    
T  37127459 cagcatgttgaggcaccccctttccactgcaaccactaagaatttattgaatatgtagc 37127517  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 497
Target Start/End: Original strand, 28756064 - 28756103
Alignment:
Q  458 gagacaccccctttccactgcaaccactaagaatttattg 497  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28756064 gagacacccccttaccactgcaaccactaagaatttattg 28756103  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 37127575 - 37127633
Alignment:
Q  327 accttcagcatgttgaggcaccatctttccaatgcaaccaccaaaaatttattgaatat 385  Q
    ||||||||||||||||| ||||  ||||||| ||||||||| || ||||||||||||||    
T  37127575 accttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatat 37127633  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 47535255 - 47535196
Alignment:
Q  465 cccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    |||||||||||| | |||||||||||||| ||| || | |||||||||||||||| ||||    
T  47535255 cccctttccactactaccactaagaatttgttgtatgtttaggcataatactatacatat 47535196  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 42138628 - 42138745
Alignment:
Q  135 aaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttgctgtaaacatatgtcgttggtgcag 234  Q
    |||||||| |||||||||||||||||||||| |  | ||||||||| |||||||||||| |||| || ||||||| ||  |||||  || |||||||  |    
T  42138628 aaactattatggaatatatattaaaatgattaaggtgatagcaaaacaagttaagtgctttggtggtttgatttgttgagaacatgcgtggttggtgtgg 42138727  T
Q  235 gtttgagtcaccatggga 252  Q
    ||||||||| ||||||||    
T  42138728 gtttgagtccccatggga 42138745  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 42138842 - 42138901
Alignment:
Q  465 cccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    ||||||||||||||| ||||||||||||| ||| || | |||||||||| ||||||||||    
T  42138842 cccctttccactgcatccactaagaatttgttgtatgtttaggcataatgctatatatat 42138901  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 13658474 - 13658529
Alignment:
Q  444 accttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaa 499  Q
    ||||||| ||| | ||| ||||||||| |||||||||||||| |||||||||||||    
T  13658474 accttcatcatatagaggcacccccttaccactgcaaccactgagaatttattgaa 13658529  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 525
Target Start/End: Complemental strand, 21519206 - 21519138
Alignment:
Q  457 tgagacaccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatatg 525  Q
    |||| ||||||||| |||||||||||||||||||||| ||| || | |||||||||||||||| |||||    
T  21519206 tgaggcacccccttcccactgcaaccactaagaatttgttgtatgtttaggcataatactatacatatg 21519138  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 35890935 - 35890979
Alignment:
Q  123 cttgggggtgcgaaactattttggaatatatattaaaatgattca 167  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||    
T  35890935 cttgggggtgccgaactattatggaatatatattaaaatgattca 35890979  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 21519394 - 21519335
Alignment:
Q  465 cccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    |||| ||||||| |||||||||||||||||||| || | |||| ||||||||||| ||||    
T  21519394 cccccttccactacaaccactaagaatttattgtatgtttaggtataatactatacatat 21519335  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 21519601 - 21519559
Alignment:
Q  136 aactattttggaatatatattaaaatgattcatttaatagcaa 178  Q
    ||||||| ||||||||||||||||||||||||  |||||||||    
T  21519601 aactattatggaatatatattaaaatgattcaggtaatagcaa 21519559  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 36560813 - 36560715
Alignment:
Q  144 tggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttgctgtaaacatatgtcgttggtgcaggtttgagt 242  Q
    ||||||||||||||||||||||||  ||||||||| |||||| ||||||||| || || ||  |||||  ||| |||  | ||||||||||||||||||    
T  36560813 tggaatatatattaaaatgattcaaataatagcaatagaagtcaagtgctctagtggtatgtattgcttcaaaaatacctggttggtgcaggtttgagt 36560715  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 32151205 - 32151298
Alignment:
Q  123 cttgggggtgcgaaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttgctgtaaa 216  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||||  || |||||||| | |||||| | |||||| || ||||||||| ||||    
T  32151205 cttgggggtgccgaactattatggaatatatactaaaatgattcaagtattagcaaaaaatgttaagggttctggtggtttgatttgctttaaa 32151298  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 524
Target Start/End: Complemental strand, 34731680 - 34731615
Alignment:
Q  459 agacaccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    |||||||| ||||||||||||||| ||||||| |||||| |||| ||| ||||||| |||||||||    
T  34731680 agacaccctctttccactgcaacccctaagaagttattgtatatttagacataatagtatatatat 34731615  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 524
Target Start/End: Complemental strand, 9991797 - 9991717
Alignment:
Q  444 accttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    ||||||| |||  |||| |||||| |||||||| |||||||| ||||||||||| | || | ||||||||||| |||||||    
T  9991797 accttcaacatactgaggcaccccttttccactacaaccactgagaatttattgtaaatatgggcataatactgtatatat 9991717  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 9991971 - 9991929
Alignment:
Q  156 taaaatgattcatttaatagcaaaagaagttaagtgctctggt 198  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  9991971 taaaatgattcaaataatagctaaagaagttaagtgctctggt 9991929  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 24489156 - 24489094
Alignment:
Q  462 caccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    ||||||||| ||||| |||||||||||||||| ||| |||| |||||||||||||||| ||||    
T  24489156 cacccccttcccactacaaccactaagaatttgttgtatatataggcataatactatacatat 24489094  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 24489567 - 24489513
Alignment:
Q  144 tggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggt 198  Q
    ||||||||||||||||||||||||  ||| | |||||||||||||||||| ||||    
T  24489567 tggaatatatattaaaatgattcaagtaacaacaaaagaagttaagtgctttggt 24489513  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 42834711 - 42834623
Alignment:
Q  123 cttgggggtgcgaaactattttggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttgct 211  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||||   |  ||||||| | |||||| | ||||||||| |||||||||    
T  42834711 cttgggggtgccgaactattatggaatatatactaaaatgattcaagaataagcaaaaaatgttaagggttctggtagtttgatttgct 42834623  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 524
Target Start/End: Original strand, 32983671 - 32983733
Alignment:
Q  462 caccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    ||||||||| |||||||||||||||| |||||||||||  | | | |||||||||||| ||||    
T  32983671 cacccccttaccactgcaaccactaaaaatttattgaaagtatggacataatactataaatat 32983733  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 41989901 - 41989975
Alignment:
Q  26 aggcttcatcattatgctaacct-cttagaggataattcaaagttatcttgtcaagaactgagacatctctattca 100  Q
    ||||| ||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||| |||||||||||| ||||    
T  41989901 aggctccatcattatgctaaccttctttgag-ataattcgaagttgtcttgtcaagaattgagacatctctgttca 41989975  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 36432611 - 36432707
Alignment:
Q  147 aatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtagtctgatttgctgtaaacatatgtcgttggtgcaggtttgagtc 243  Q
    |||||||||||||||||||||    ||| ||| |||||| ||||||| || | || ||  |||||| |||||||  | |||||||||||||||||||    
T  36432611 aatatatattaaaatgattcaaagtataccaatagaagtcaagtgctatgctggtatgtattgctgcaaacatacatggttggtgcaggtttgagtc 36432707  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 33582629 - 33582567
Alignment:
Q  462 caccccctttccactgcaaccactaagaatttattgaatatgtaggcataatactatatatat 524  Q
    ||||||||| |||||||||||||| |||||||||||||  | | |||||||||||||| ||||    
T  33582629 cacccccttaccactgcaaccactgagaatttattgaaagtatgggcataatactataaatat 33582567  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 148235 - 148290
Alignment:
Q  444 accttcagcatgttgagacaccccctttccactgcaaccactaagaatttattgaa 499  Q
    ||||||| ||| | ||| ||||||||| |||||||||||||| |||||||||||||    
T  148235 accttcatcatatagaggcacccccttaccactgcaaccactgagaatttattgaa 148290  T

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