View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_82 (Length: 202)
Name: NF18003_low_82
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 35183107 - 35183269
Alignment:
| Q |
23 |
cagccatcccccaaatgcctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataag |
122 |
Q |
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| T |
35183107 |
cagccatcccccaaatgcctatagctcgaaattcataatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataag |
35183206 |
T |
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| Q |
123 |
gtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaacagtattctt |
185 |
Q |
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| T |
35183207 |
gtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaacaatattctt |
35183269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 35054273 - 35054432
Alignment:
| Q |
23 |
cagccatcccccaaatgcctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataag |
122 |
Q |
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| T |
35054273 |
cagccatcccccaaatacctacaactcgaagttcatcatcatctgagcttaatttcaaaagactttctaattcttctacccgaggttgtgtcgcaataag |
35054372 |
T |
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| Q |
123 |
gtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaacagtatt |
182 |
Q |
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| T |
35054373 |
gtcatcagcaaaccctgagaatttatgacccaatgtttttatcacctcctgaacaatatt |
35054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 35177150 - 35177304
Alignment:
| Q |
23 |
cagccatcccccaaatgcctatagctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaataag |
122 |
Q |
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| T |
35177150 |
cagccatcccccaaatacctataaaacgaaagtcatcattgtctgagtttaatttcagaagactttctaattcttctactcgaggttgtatcccgataag |
35177249 |
T |
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| Q |
123 |
gtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaaca |
177 |
Q |
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| T |
35177250 |
gtcatcagcaaaccctgagaatttatgacccaatgtttttattacctgctgaaca |
35177304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 499450 - 499551
Alignment:
| Q |
76 |
ttcaaaaggctttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaa |
175 |
Q |
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|||||||| |||||||| ||||||| ||||||||||| ||||||||||||||| |||| || ||||||||||||||| || ||||||||| || |||| |
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| T |
499450 |
ttcaaaagcctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaa |
499549 |
T |
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| Q |
176 |
ca |
177 |
Q |
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|| |
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| T |
499550 |
ca |
499551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 25478164 - 25478231
Alignment:
| Q |
87 |
ttctaattcttctactcgaggttgtatcccaataaggtcatcagcaaaccccaagaatttatgaccca |
154 |
Q |
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|||||||||||||||||||| |||||| || || |||||||||||||| || |||| |||||||||| |
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| T |
25478164 |
ttctaattcttctactcgagtttgtattccgatcaggtcatcagcaaaacctgagaacttatgaccca |
25478231 |
T |
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