View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_low_9 (Length: 524)
Name: NF18003_low_9
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 4763174 - 4763437
Alignment:
| Q |
11 |
cataggaaataatataatgttttatactagttagattagagacattggtggtgagtgggaggtgcaattattgatcaaatacgtcaggctattgccatat |
110 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4763174 |
cataagaaataatatcatgttttatactagttagattagagacattggtggtgagtgggaggtgcaattattgatcaaatacgtcaggctattgccatat |
4763273 |
T |
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| Q |
111 |
gcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggattaagatgaaaaaatctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4763274 |
gcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggattaagatgaaaaaatctg |
4763373 |
T |
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| Q |
211 |
caattttttaattaggttttactcgtggaggaggtagatgtgtgtctgttaacctgcatatatt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4763374 |
caattttttaattaggttttactcgtggaggaggtagatgtgtgtctgttaacctgcatatatt |
4763437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 4638825 - 4639083
Alignment:
| Q |
11 |
cataggaaataatataatgttttatactagttagattagagacattggtggtgagtgggaggtgcaattattgatcaaatacgtcaggctattgccatat |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4638825 |
cataagaaataatataatgttttatactagttagattagagacattggt---gagtgggaggtgcaattattgatcaaatacgtcaggctattgccatat |
4638921 |
T |
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| Q |
111 |
gcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggattaagatgaaaaaatctg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
4638922 |
gcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggattaggattaaaaaatctg |
4639021 |
T |
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| Q |
211 |
caattttttaattaggttttactcgtggaggaggtagatgtgtgtctgttaacctgcatatatta |
275 |
Q |
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| T |
4639022 |
caattttttaattaggtttttcttgt---ggaggtagatgtgtgtctgttaacctgcatatatta |
4639083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 4668424 - 4668629
Alignment:
| Q |
19 |
ataatataatgttttatactagttagattagagacattggtggtgagtgggaggtgcaattattgatcaaatacgtcaggctattgccatatgcttacgg |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
4668424 |
ataatatcatgttttatactagttagattagagacattggtg---agtgggaggtgcaattattgatgaaatacgtcaggctattgc-atatgcttacgg |
4668519 |
T |
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| Q |
119 |
attaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggattaagatgaaaaaatctgcaattttt |
218 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
4668520 |
attaacctgcacgtcacaaagcaaatcaaa----ctttttaaaagcctaatatatcggaattattgattgtggattaggattaaaaaatctgcaattttt |
4668615 |
T |
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| Q |
219 |
taattaggttttac |
232 |
Q |
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||||||||||||| |
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| T |
4668616 |
caattaggttttac |
4668629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 4639398 - 4639502
Alignment:
| Q |
272 |
attacagtgaataagaaactaagctatgatagtgttgtttttaaaatgcactacagtgagttgaagaaagcgcgagtgtgtgtttctgttgcaaaaacat |
371 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4639398 |
attacagtgagtaagaaactaagctatgatagtgttgtttttaaaatgcactacagtgagttgaagaaagtgcgagtgtgtgtttctgttgcaaaaacat |
4639497 |
T |
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| Q |
372 |
aaaag |
376 |
Q |
| |
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||||| |
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| T |
4639498 |
aaaag |
4639502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 407 - 509
Target Start/End: Original strand, 4639533 - 4639635
Alignment:
| Q |
407 |
gatagcagagaaatatttattcacaatgagacccatcagtacagaaaataaaaaccccgctcaaaccaaagtactcaaaaattaaattgttgttgttggc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4639533 |
gatagcagagaaatatttattcacaatgagacccatcagtacataaaataaaaaccccgctcaaaccaaagtactcgaaaattaaattgttgttgttggc |
4639632 |
T |
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| Q |
507 |
tat |
509 |
Q |
| |
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||| |
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| T |
4639633 |
tat |
4639635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 4176883 - 4176713
Alignment:
| Q |
11 |
cataggaaataatataatgttttatactagttagattagagacattggtggtgagtgggaggtgcaattattgatcaaa-tacgtcaggctattgccata |
109 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||| || ||| |||||||| ||| ||||| |
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| T |
4176883 |
catagggaataatataatgttttatactagttaga-----gacaatggtg---agtgggaggtacaattattaatgaaaatacgtcag---atttccata |
4176795 |
T |
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| Q |
110 |
tgcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggatta |
195 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4176794 |
tgcttacggattaacctacacgtcacaaagcaaatca----aactttttaaaagcctaatatatcggaattattgattgtggatta |
4176713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 407 - 500
Target Start/End: Original strand, 4672985 - 4673078
Alignment:
| Q |
407 |
gatagcagagaaatatttattcacaatgagacccatcagtacagaaaataaaaaccccgctcaaaccaaagtactcaaaaattaaattgttgtt |
500 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||| |||||||||||||||||| |||||| |||||||||| |
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| T |
4672985 |
gatagcagagaaatatatattcacaatgagatccatcagtataaaaaataaagaccctgctcaaaccaaagtactcgaaaattgaattgttgtt |
4673078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 4180713 - 4180543
Alignment:
| Q |
11 |
cataggaaataatataatgttttatactagttagattagagacattggtggtgagtgggagg-tgcaattattgatcaaatacgtcaggctattgccata |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||| | |||||||| || ||||||||||| ||| ||||| |
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| T |
4180713 |
catagggaataatataatgttttatactagttaga-----gacaatggtg---agtgggagggtacaattattaatgaaatacgtcag---atttccata |
4180625 |
T |
|
| Q |
110 |
tgcttacggattaacctacacgtcacaaagcatatcaaattaactttttaaaagcctaatttatcggaattattgattctggatta |
195 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||| |||||| | |||||||| ||||||| |
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| T |
4180624 |
tgcttacggattaagctacacgtcacaaagcaaatca----aactttcaaaaagcctaatatatcggtaatattgattgtggatta |
4180543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 4659074 - 4659148
Alignment:
| Q |
407 |
gatagcagagaaatatttattcacaatgagacccatcagtacagaaaataaaaaccccgctcaaaccaaagtact |
481 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
4659074 |
gatagtagagaaatatttattcccaacgagacccatcaatacagaaaataaagaccccgctcaaaccaaagtact |
4659148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 4672873 - 4672936
Alignment:
| Q |
291 |
taagctatgatagtgttgtttttaaaatgcactacagtgagttgaagaaagcgcgagtgtgtgt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
4672873 |
taagctatgatagtgttgtttttaaaatgcactacagtgagttgaacaaagtgccagtgtgtgt |
4672936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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