View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_high_11 (Length: 216)
Name: NF18004_high_11
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 46943066 - 46943251
Alignment:
| Q |
18 |
atgagtatgtctccgtgggaacaagtgccttaggacacttgttaatgactaccaatgcgtataaatatacactattgacagaccttttgaaattagcggc |
117 |
Q |
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| T |
46943066 |
atgagtatgtctccgtggaaacaagtgccttaggacacttgttaacgactacctatgcgtataaatatacactattgacagaccttttgaaattagcggc |
46943165 |
T |
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| Q |
118 |
ttcaacaacattattagagggaataatcataatatcaagcnnnnnnntctcagcctgcgtatcttctacatagtatcatcattcat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |
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| T |
46943166 |
ttcaacaacattattagagggaataatcataatatcaagcaaaaaatgctcagcttgcgtatcttctacatagtatcatcactcat |
46943251 |
T |
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