View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_high_3 (Length: 335)
Name: NF18004_high_3
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 8285446 - 8285763
Alignment:
| Q |
16 |
tttacatataatgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgc |
115 |
Q |
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| T |
8285446 |
tttacatatattgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgc |
8285545 |
T |
|
| Q |
116 |
aatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatga |
215 |
Q |
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| T |
8285546 |
aatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgtgtgtttgtcaggatttggtgtggaagatga |
8285645 |
T |
|
| Q |
216 |
agcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctcttt |
315 |
Q |
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| T |
8285646 |
agcggaaaaatgtatggtgattactaaggacgccgcattcaaggttgatgcagggccctttaacgttcgtgcatcctttggagatagagcagttctcttt |
8285745 |
T |
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| Q |
316 |
gactcctttgctactcca |
333 |
Q |
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| T |
8285746 |
gactcctctggtactcca |
8285763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 322
Target Start/End: Original strand, 34697227 - 34697492
Alignment:
| Q |
57 |
cacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaag |
156 |
Q |
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| T |
34697227 |
cacccagaatttaaagcacggggtatggttatgttctataatatctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgag |
34697326 |
T |
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| Q |
157 |
ttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattca |
256 |
Q |
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| T |
34697327 |
ttgcatatgactcataaattgttgtatgtgtgtttctcaggttttagtgaggacaatgttactgcaaaatgtagggtgattactatcgacggtgcattcg |
34697426 |
T |
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| Q |
257 |
aggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
322 |
Q |
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| T |
34697427 |
aagttaatgtggggccctttaacgttcgtaaattctttggcgatggagcagttctgcttgactcct |
34697492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 34687526 - 34687581
Alignment:
| Q |
268 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctt |
323 |
Q |
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| T |
34687526 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactcctt |
34687581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 24968890 - 24969058
Alignment:
| Q |
155 |
agttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcatt |
254 |
Q |
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| T |
24968890 |
agttgcatattacagatgaattgttg--tgtgtgtttgtcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtatt |
24968987 |
T |
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| Q |
255 |
caaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctttg |
325 |
Q |
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| T |
24968988 |
cgaggttcatgcagggtcctttaacgttcgtgaattgtttggtgatgaagcagttctatttgactcctttg |
24969058 |
T |
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