View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_high_6 (Length: 277)
Name: NF18004_high_6
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2446404 - 2446203
Alignment:
| Q |
1 |
tttctgaaatgcgagttaccttgcttcaatatacttcacctagctatatagtttaggcagttatagagtgatggattgaaaaattctagaannnnnnnca |
100 |
Q |
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| T |
2446404 |
tttctgaaatgcgagttaccttgctttaatatacttcacctagctatatagtttaggtagttatagagtgatggattgaaaaattctagaatttttttca |
2446305 |
T |
|
| Q |
101 |
ctcacaaatgacacctaaccaaaacaagcaaaaagtagaaatatgttgatagagcacactgagaaggtgtgactaaccctttaataagggaaataaaaat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
2446304 |
ctcacaaatgacacctaaccaaatcaagcaaaaagtagaaatatgttgatagagcacattgagaaggtgtgactaacccgttaataagggaaataaaaat |
2446205 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
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|| |
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|
| T |
2446204 |
at |
2446203 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 5804642 - 5804691
Alignment:
| Q |
187 |
agggaaataaaaatataaaataaagcaaagatatcatatgataaattcct |
236 |
Q |
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|||||||| ||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
5804642 |
agggaaatgaaactataaaataaagcaaagttatcacatgataaattcct |
5804691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 7386991 - 7386942
Alignment:
| Q |
162 |
agaaggtgtgactaaccctttaataagggaaataaaaatataaaataaag |
211 |
Q |
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||||||||||||||||||||| || |||||||| ||| |||||||||||| |
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| T |
7386991 |
agaaggtgtgactaacccttttattagggaaatgaaactataaaataaag |
7386942 |
T |
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