View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_low_1 (Length: 656)
Name: NF18004_low_1
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 227 - 640
Target Start/End: Original strand, 41614751 - 41615164
Alignment:
| Q |
227 |
aatatttataatattattataagcaagagttagtaattagaaatcggtatggaaagggagaatttgttagcaacatgatcaaattatttatagataacgt |
326 |
Q |
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| T |
41614751 |
aatatttataatattattataagcaagagttagtagttagaaatcggtatggaaagggagaatttgttagcaacatgatcaaattatttatagataacgt |
41614850 |
T |
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| Q |
327 |
tccacttggttaactatattgcaagaagtgaaaagtttgtaatatagtcaacaaaaagaagtattttaattttcagttagccttccctaattggttagtt |
426 |
Q |
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| T |
41614851 |
tccacttggttaactatattgcaagaagtgaaaagtttgtaatatagtcaacaaaaagaagtattttaattttcagttagccttccctaattggttagtt |
41614950 |
T |
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| Q |
427 |
tgttattataaccaatctaattaggttggattagtctactatatctctttgagttcctcttgtatagacactcctttccaattgcattcagattattcta |
526 |
Q |
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| T |
41614951 |
tgttattataaccaatctaattaggttggattagtctactatatctctttgagttcctcttgtatagacactcctttccaattgcattcagattattcta |
41615050 |
T |
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| Q |
527 |
tttttcaatagttcaagaatattcactttatctcttcttgttccattatttaatagtttgagctaaagaatatttgctaggcaacttttatttccaagta |
626 |
Q |
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| T |
41615051 |
tttttcaatagttcaagaatattcactttatctcttcttgttccattatttaatagtttgagctaaagaatatttgctaggcaacttttatttccaagta |
41615150 |
T |
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| Q |
627 |
taagttatgcatat |
640 |
Q |
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| T |
41615151 |
taagttatgcatat |
41615164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 41614484 - 41614696
Alignment:
| Q |
14 |
caaaggcaaagataacaacgaaggttgtgcgacttgcaatgcaaaatgcaacccgtacatagnnnnnnnnnnnnnnnnnnnnnngagcaagccatacata |
113 |
Q |
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|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
41614484 |
caaacgcaaagataacaacggaggtcgtgcgacttgcaatgcaaaatgcaacccgtacatagttttctttttccttctttttttgagcaagccatgcata |
41614583 |
T |
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| Q |
114 |
gtttcatcaatattttttgtacgaatacaaattacaattatttgtatttctttttcatcttttgcaacaaaaaatgatgtgtcttttctttatttcgcat |
213 |
Q |
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| T |
41614584 |
gtttcatcaatattttttgtacgaatacaaatgacaatcatttgtatttctttttcatcttttgcaataaaaaatgatgtgtcttttctttatttcgcat |
41614683 |
T |
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| Q |
214 |
attgtcttaactc |
226 |
Q |
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||| | ||||||| |
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| T |
41614684 |
atttttttaactc |
41614696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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