View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18004_low_12 (Length: 226)
Name: NF18004_low_12
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_12 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2446700 - 2446467
Alignment:
| Q |
1 |
tgctagaacatattcaaatattagcatttaaaaatagttaaaaggtaag--------tagccaacactactctgataagagcaaattgttaagtagatgt |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446700 |
tgctagaacatattcaaatattagcatttaaaaatagttaaaaggtttgaatattactagccaacactactctgataagagcaaattgttaagtagatgt |
2446601 |
T |
|
| Q |
93 |
atcatctacattttctcacatctcttaagtaaaacctaagaaattgaattaatccaatgactgatcgatactctcaatcaataactaaattaatttaaat |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446600 |
atcatctacattttctcacatctcttatgtaaaacctaagaaattgaattaatccaatgactgatcgatactctcaatcaataactaaattaatttaaat |
2446501 |
T |
|
| Q |
193 |
gattttttatggattaacctagagattttgtact |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2446500 |
gattttttatggattaacctagagattttgtact |
2446467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University