View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18004_low_2 (Length: 540)
Name: NF18004_low_2
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 56311922 - 56312079
Alignment:
| Q |
195 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56311922 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
56312021 |
T |
|
| Q |
295 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctgg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56312022 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctgg |
56312079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 56311749 - 56311894
Alignment:
| Q |
28 |
tgttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56311749 |
tgttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
56311848 |
T |
|
| Q |
128 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56311849 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
56311894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 56312123 - 56312189
Alignment:
| Q |
399 |
gagaacttcccctttcctaaagcaattctggaaacccnnnnnnnngttgccatccctctttgattta |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
56312123 |
gagaacttcccctttcctaaagcaattctggaaacccttttttttgttgccatccctctttgattta |
56312189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 8449724 - 8449761
Alignment:
| Q |
216 |
ccagggtttcgtttccatccaactgaagaagaacttgt |
253 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
8449724 |
ccagggtttcgtttccacccaactgatgaagaacttgt |
8449761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University