View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_low_3 (Length: 340)
Name: NF18004_low_3
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 37099608 - 37099816
Alignment:
| Q |
17 |
aaaagcatggcttctttgaagggtttagtgagttcttgctcatacttgataagcatctcacaatatgcctccatgaactgatccaaacctggatcttcac |
116 |
Q |
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| T |
37099608 |
aaaagcatggcttctttgaagggtttagtgagttcttgctcatacttgataagcatctcacaatatgcctccatgaactgatccaaacctggatcttcac |
37099707 |
T |
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| Q |
117 |
ctatacaagaactactacttcctgtccttcctgaagaaccattcaatatttcacattttgcacatgactcctctaagcttgccaccacttcaggaggtgc |
216 |
Q |
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| T |
37099708 |
ctatacaagaactactacttcctgtccttcctgaagaaccattcaatatttcacattttgcacatgactcctctaagcttgccaccacttcaggaggtgc |
37099807 |
T |
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| Q |
217 |
tccaacctg |
225 |
Q |
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| T |
37099808 |
tccaacctg |
37099816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 328
Target Start/End: Original strand, 37099886 - 37099917
Alignment:
| Q |
297 |
tctcaaaaacaaacattttgtagcttgagtat |
328 |
Q |
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| T |
37099886 |
tctcaaaaacaaacattttgtagcttgagtat |
37099917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 8796552 - 8796659
Alignment:
| Q |
17 |
aaaagcatggcttctttgaagggtttagtgagttcttgctcatacttgataagcatctcacaatatgcctccatgaactgatccaaacctggatcttcac |
116 |
Q |
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| T |
8796552 |
aaaagcatagcttcctttaagggtttggaaagttcttgctcatacttgataagcatctcacagtaagcttccatgaactgatctagagctggatcttcac |
8796651 |
T |
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| Q |
117 |
ctatacaa |
124 |
Q |
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| T |
8796652 |
ctaaacaa |
8796659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 38511382 - 38511423
Alignment:
| Q |
35 |
aagggtttagtgagttcttgctcatacttgataagcatctca |
76 |
Q |
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| T |
38511382 |
aaggattttgtgagttcttgctcgtacttgataagcatctca |
38511423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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