View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18004_low_5 (Length: 301)
Name: NF18004_low_5
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 31241125 - 31240883
Alignment:
| Q |
42 |
gcagcaaatccaaatctaattcaac-ctgtgcaaaaaacaaattcatgttaagagtggtgaatgaatacaaatctcatacaaaactattagatattattc |
140 |
Q |
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| T |
31241125 |
gcagcgaatccaaatctcatacaaatctgtgcaaaaaacaaattcatgttaagagtggtgaatgaatacaaatctcatacaaaactattagatattattc |
31241026 |
T |
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| Q |
141 |
tnnnnnnntatcaactagcttgtatatatagttccattttatcaagtatcttaaaaactttaaattatgaatttgacaaataattaattacattttattc |
240 |
Q |
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| T |
31241025 |
taaaaaaatatcaactagcttgtatatatagttccattttatcaagtatcttaaaaactttaaattatgaatttgacaaataattaattacattttattc |
31240926 |
T |
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| Q |
241 |
tacaatgaaattaatgttaatatgaacttaattataggtgatc |
283 |
Q |
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| T |
31240925 |
tacaatgaaattaatgttaatatgaacttaattataggtgatc |
31240883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 31231947 - 31231678
Alignment:
| Q |
15 |
tatgttgaatgtgtgaatttgtcgatcgcagcaaatccaaatctaattcaac-ctgtgcaaaaaacaaattcatgttaagagtggtgaatgaatacaaat |
113 |
Q |
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| T |
31231947 |
tatgttgaatgtgtgaatttatcgattgcagcgaatccaaatctcatacaaatctgtgcaaaaaacaaattcatgttaagagtggtgaatgaatacaaat |
31231848 |
T |
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| Q |
114 |
ctcatacaaaactattagatattattctnnnnnnntatcaactagcttgtatatatagttccattttatcaagtatcttaaaaactttaaattatgaatt |
213 |
Q |
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| T |
31231847 |
ctcatacaaaactagtagatattaatctaaaaaaatatcaactagaatgtatatattgttccattttattaagtatctcaaaaactttaaattatgaatt |
31231748 |
T |
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| Q |
214 |
tgacaaataattaattacattttattctacaatgaaattaatgttaatatgaacttaattataggtgatc |
283 |
Q |
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| T |
31231747 |
tgaaatatagttaattacattttaatctaaaataaaattaatgttaatgtgaacttaattataggtgatc |
31231678 |
T |
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